RnoEX6061742 @ rn6
Exon Skipping
Gene
ENSRNOG00000000854 | Ncr3
Description
natural cytotoxicity triggering receptor 3 [Source:RGD Symbol;Acc:727881]
Coordinates
chr20:5174969-5175773:+
Coord C1 exon
chr20:5174969-5175313
Coord A exon
chr20:5175417-5175548
Coord C2 exon
chr20:5175659-5175773
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCCCCGTGTCCTGCTGTAGAGC
3' ss Score
8.09
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GATCCTGTGCTGTCTGGGTGTCTCAGCCCCCTGAGATTCGTGCACAAGAGGGCACCACTGCCTCCCTGCCCTGTTCGTTCAATGCCAGCAGAGGGAAAGCGGCCATTGGCTCTGCCACATGGTACCAAGACAAAGTAGCCCCGGGGATGGAGTTGAGCAACGTGACCCCAGGGTTCAGGGGCCGAGTGGCCTCTTTTTCTGTTTCCCAGTTCATTAGAGGCCACAAGGCCGGGCTGCTCATACAGGACATCCAAAGCCATGACGCCAGAATCTACGTGTGCAGAGTGGAGGTGCTAGGCCTGGGCGTCGGAACAGGAAACGGGACTCGGCTGGTGGTGGAGAAAG
Seq A exon
AGCCTCCTCAACAAGCCTCCAACGCAGAGCCAGAGCGAGCTGCCTACACAAGTCTCCTCCTTCGCGCTGGCGTCTATGCCCTCAGCTTTCTCTCTGTGGCCACCGGCAGTGTCATCTATTACCAGGGCAAAT
Seq C2 exon
GTCTCTGTCACGTGGGAAACACCGCCACTCCTCCCACAGCCTCTGAGGAGCGATTCTAAATCCCAAAGATCCAGCACTCAAAGAGGCCGGCAATAAATCCTTACATTTTCTCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000854-'7-5,'7-3,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.222 C2=0.368
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=94.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTGGCCTCTTTTTCTGT
R:
GGCCTCTTTGAGTGCTGGATC
Band lengths:
252-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]