BtaINT0100646 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44590823-44591122:+
Coord C1 exon
chr2:44590823-44590927
Coord A exon
chr2:44590928-44591014
Coord C2 exon
chr2:44591015-44591122
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
AAATGACATTTTTCTTGCAGAAT
3' ss Score
7.76
Exon sequences
Seq C1 exon
GTTGCCTACAAAGCCAAAGGAGAGGAAGTTATTCACAAGTACAGTCTGCCAGCGGACCTGCCCCAGTTCATTCAGGCTAAAGTCAATGCCTACAATATCAGCGAG
Seq A exon
GTGTGCACGAGGGTTCAGTTGCTCACGGAGGGTTAAGCCTTTTCTGCATGTGGTCTGAGTTATCTTCAAATGACATTTTTCTTGCAG
Seq C2 exon
AATTTGTACAAAGCAGACTTGAAAGATTTGAGCAAGAAGGGATACGACCTGAGAATTGATGCGATTCCCATCAAAGCTGCCAAAGCAGCCAGGCAGGCAGCAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907:ENSBTAT00000055345:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(59.3=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(33.3=25.0),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACAAAGCCAAAGGAGAGG
R:
GCAGCTTTGATGGGAATCGCA
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]