GgaINT0041832 @ galGal3
Intron Retention
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28941565-28942292:-
Coord C1 exon
chr6:28942188-28942292
Coord A exon
chr6:28941677-28942187
Coord C2 exon
chr6:28941565-28941676
Length
511 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTCTGTCTTTCCTTTCTCAGGTT
3' ss Score
12.3
Exon sequences
Seq C1 exon
TTGAACTACCGAGCCCAGTATGAGAAGACAAAAACAAATTACACTCTACCTCAGGACATACCTCAGTTAGTCAAGGCAAAAGCCAATGCAGAATTATATAGTGAG
Seq A exon
GTAAGTCAAGTTACGTGGAAATATTTGTATTCACAATGACATCAGAAGAGAGAAATGAATGTAAAGATGATAGCACTGTTTCTGGAAACATCTATGTTTATAAGCTGTCTTCAATGAACAGCATGAGATTTAGGAACAAGTACTTCCTCCCTAGAGATCAGCTTCTACTAATCCACAGTATTTGCATATTAAAAAACAAACAAACAAACAAAAAAACACCACAGATGCTTTTGGAAATGTTTCCCTCCTCCATGGGACTTTAAAACCTAGAGATATTGGAGCATCTTTGGGAATGTGACGTGACTGTAAACTCCAAGCATAAAGCTAGTGACTCAATCCTAGCCAATTAATTAACTCAAATTATAATGAACTGTGACGTAAGAGGGTTCTAGTTTGTGGGCAGAGAAGATTTATAGTTCTGTTTTGCTATTAGTCATTCTCATGTTCAGTTAAGATATTGTGTGTTGTATAGTGACAACTATCTATAGTGTTTCTGTCTTTCCTTTCTCAG
Seq C2 exon
GTTAAGTACAAAGAAGGCTGGGAGAAGAGCAAGGGCCAGGGATTTGAAATGAAGCTTGATTCTCTGCCTTTACTTGCTGCCAAAGCTTCAAGGGATCTTGCCAGTGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914:ENSGALT00000014498:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=28.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTACCGAGCCCAGTATGA
R:
ACATCACTGGCAAGATCCCTT
Band lengths:
214-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]