RnoINT0103037 @ rn6
Intron Retention
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277151297-277152472:-
Coord C1 exon
chr1:277152368-277152472
Coord A exon
chr1:277151405-277152367
Coord C2 exon
chr1:277151297-277151404
Length
963 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTTGTGTTTGTGTTTGTCAGGTG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GTGAATTACCGAGCTGATTACGAGAGAAACAAGCTGAACTACACATTGCCCCAGGACGCTCCTCAGATGCTGAAGGCGAAGGCCAACGCGCAACTGTTCAGCGAG
Seq A exon
GTAAGGGCAAGGTGGGGAGAGCGTGGCGTGAACGTGGAAAGAAACAGTCACGCAAGCAGGGCCTACTCACCTCCCAGGGAAGAGTCTTCTAGGGCGTTCATTGCAATGGGACTTAGAGTTTTGACACACAGTCCCTGGGCATGAATTATTCATAGTGATGTAGTTCCTGTATGGACACACGTGTAGTATGTGAACACGCAGACTGGTCACCACCACCATCATCACCCTGGCGACTGACTGGTGACTTTTCGAGAAGAGATTTTTTTAAGCTTCAAGAACAATCTTGATCCAATCAACAAAGACACAAGGAGTCACAGGGTAGACTGTGACTAGGCGACTAGCCTAGGTTGGAGTTACGGGACAGGAAAACAAAAAGCAGAGACAAACAGGATATGGTGACATAAATATGACATGTTGTAAGGCACAGCCTGGCTGTAGGGTGTCTCCCAGCATTTGCTGCTGTGGGTTTTAATGTGAGACAGACACAGATTCAGAAGTCATGCTGGATTTTGATCTGTATGACCCTAGCAAATACCTTCAGCTTGCTGAGCCTTGGCTTTCCTGAAGATTCGGAGGTAGTGTCTACAAAGCACACTACCACACACAGTGGCCGTTACAGGCAGCATCAATCCCTTGCTTCTTGGCATCACCACACCCAACTTACACTCCCAGCAGCCTGAGAGTGATAATATGCGTTTTTCAAATGGTCAGCCACAGCTCATAGAGGTAATTGCCCAAAGTCACATGACCAGGCAATGAGGGTTCTTTGTCCTGTCCCTGGAGTAGCCCAGGGGATCAGTGTTAACAGTGTTACTGTTGCAGTCTTGAAAACAATAGTCAAGACTCCCCCGCCTGCCAACAATGGAAGAAACCAAGTTTGCTTTAAAGAAACAGCCTCTCAACTTCCAGCAGACGGGTGGGTAGCAGCCCCCACTCGCTTCTGTTTGTGTTTGTGTTTGTCAG
Seq C2 exon
GTGAAGTACAAAGAAGGCTGGCAGAAGACAAAGGGGAAAGGATTTGAGATGAAGCTGGACGCCATGTCTCTGTTGGCCGCCAAAGCCTCGGGGGAGCTTGCTAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714:ENSRNOT00000038017:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=28.6),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATTACCGAGCTGATTACGAGA
R:
CTAGCAAGCTCCCCCGAGG
Band lengths:
209-1172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]