BtaINT0103640 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34384405-34385628:-
Coord C1 exon
chr26:34385524-34385628
Coord A exon
chr26:34384513-34385523
Coord C2 exon
chr26:34384405-34384512
Length
1011 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCTGTGATTCTGTTTGTCAGGTT
3' ss Score
8.72
Exon sequences
Seq C1 exon
GTGAATTACCGTGCTGACTATGAGAAGAACAAGTTGAATTATACGTTGCCCCAGGATGTCCCTCAGCTGGTGAAGGCCAGAACCAACGCGGAATTGTTTAGTGAG
Seq A exon
GTGAGCAAGGAGCATGGGTGAGAACGCGGTGGGGGCTATAAACAGATGTGAAAATGAAGGGACAAGGGTGGTCCAGCAAACAGGGCCCAGGGACTCCTCTGTTCATGGAGAGGTTCATCAGAGGCGCCCATCAGGTTGTAATTTTGAATGTTGCTGCCTCATGGCATGTGGTAGTTCATGAGAATAAACGGATCACAGCAATTGAATTCCCAGTGTTTGTGCCTGCGTATGGTGTATGCTGGAACACACACATACACACACTCATACACACTCATCATCATCCCCATCATCATCCTGATGACTCCTAGCTGGTGCTTTGCTGTGTGAGTAAAGTTTAAGTTTGAAGAAGACAAAACTTAATCACCAGATTCTCCCAGGAGTCACAATGAGGCTATGACTAGGCTTCTTATTCTAGATGGGAACTGTAGGGCAGGAGAAAGGAAAGAGGAACTAACCTGGGAGGTGGTGGTTTAGTCGCTAAGTCATGTCCCACTCTTGGGACCCTGTGGACTGTAGCCCACCGGGCTCTTCTGTCCATGGAATTCCCCAAGCGGGAATACTGGAGTAGGTTGCTATGCCCCTTCTCCAGGGGATCTTTCCCACCCAGGAATTGAACCCACATCTCTTATGTCTCCTGCATTGGTAGGCTGGTTCTTTACCACTAGCGCCACGAGGAAAGCCCCTTAGACAGATATATGATATTATTTTTGCAAATGGTAAACTGAGGACCAAAAAAGTGAAGTAGTTTGTCCAAGGTCACACGATCAGGCAGCGACAGTGCTGGGATGAACCCGTGGGTCTTCTCATTGCCCTGTCCCATCATTGCCCCACACGGCCCTACAGCGAGGGAATCCACAGTGTTAACAATTGTTGTTATCACTTCGATAGTAACAGCCAAGATTCTGCTCTGTAAACAGATGAAGGTGCCAACTTTGTAATTTAAAAAACTTCTGTTCAACTTTTGGCAAGACTGGACAGTGATTCCCATTCACCTGTGATTCTGTTTGTCAG
Seq C2 exon
GTTAAGTACAGAGAAGGCTGGGAGAAGACAAAGGGGAAAGGATTTGAGATGAAGCTGGATGCCATGTCTCTGCTGGCTGCCAAAGCTTCCGGAGAGCTTGCAAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327:ENSBTAT00000025740:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=28.6),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATTACCGTGCTGACTATGAGA
R:
GCAAGCTCTCCGGAAGCTTT
Band lengths:
206-1217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]