MmuINT0110593 @ mm10
Intron Retention
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56364302-56365496:-
Coord C1 exon
chr19:56365392-56365496
Coord A exon
chr19:56364410-56365391
Coord C2 exon
chr19:56364302-56364409
Length
982 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGCTTGTGTTTGTTTGTCAGGTG
3' ss Score
9.49
Exon sequences
Seq C1 exon
GTGAATTACCGAGCTGACTACGAGAGAAACAAGCTGAACTACACATTGCCCCAGGACGCCCCTCAGCTGCTGAAGGCCAAGGCCAATGCAGAACTGTTCAGCGAG
Seq A exon
GTAAGAGCAAGCTGGGGAGAGCTTGGTGTGACATTCACCAATGCTCAAACAAGCAGGGCCTCCTTGCCTCCCAGGAAAGAGTCTTCCAGGGCATTCAACACAGTGGGATTTAGAATTTTGGCACACCTCCCTGGGTACATGATATGTGAACATGCAGTCTTGTCACCACCACCATCATCATCCCAGCGACTGACTGGTGACTTTGTGAGAAGAGATTTTTTTTTTTAAGTTTCAAGAATAATCTTGATATGATCAACAAAAACACAAGGAGTCACAGAATGGTCTGCGATTAGGCCACTAGCCTAGGTGGGAGTTATGGGGAAGGAAAACGAAAAATAGGGACAAATTTTTTTGTACAAGACTACTCTGTGTTGAGGCGGAGGACGTGATGACATAAATCTGATGTGTTTATTGGGCTCATCGTGGCGTTAACGTACCTTCCAGCATTTGTTGCCGTGGGTTTTGATATGAGACAAACCCCGATCCAGAAGTCATGCTGGACTCGTTTGAGCTGTACGACCCTAGTAAATAAATGCCTTGCTGAGCCTTGGCTTGTGTGAAGATTTGTAGTTAGTGTCTACAACCCTTTTAGGAAGGGACCACACACAGTGGTTCTTGCAGGCAGCATCAAATCTTCGCTTCTTGGCTGCACCACACAGTTTAGGATTTGCCTTCAAGCTCCACGCCCAACTTACATTTCCAGCAGCCCGGGGAATTATAATATGCATTTTGTAAATGGTCAGCCACAGCTCAGAGAGGTAATTACCCAAAGTCACTTGACCAGGCAATGAAGGTTCTTTGTCCTGTCCCTAGGGTGGCCCTAAGGGTCAGTGATTACTGTTACAGTCTTGACAATAATAGCTAAGACTCTCCCGCCTGCCAATAGAAGAAACCAAGTTTGCTTTAAAGAAAAATCCTCTCAACTTCCCGCAGACTGGTGGGTAGCAGGGCCCACTCACCTGTGCTTGTGTTTGTTTGTCAG
Seq C2 exon
GTGAAGTACAAAGAAGGCTGGCAGAAGACAAAGGGGAAAGGCTTTGAGATGAAGCTGGACGCCATGTCTCTGTTGGCCGCCAAAGCCTCGGGGGAGCTTGCTAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134:ENSMUST00000073536:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=28.6),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATTACCGAGCTGACTACGA
R:
CTAGCAAGCTCCCCCGAGG
Band lengths:
209-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types