BtaINT0100724 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22418914-22422192:-
Coord C1 exon
chr13:22422100-22422192
Coord A exon
chr13:22419007-22422099
Coord C2 exon
chr13:22418914-22419006
Length
3093 bp
Sequences
Splice sites
5' ss Seq
AATGTATGA
5' ss Score
2.55
3' ss Seq
ATCTTGCGTTTGTCTCCCAGCTC
3' ss Score
7.97
Exon sequences
Seq C1 exon
GTAAAATACAAAGAAGAGGTGAAACATGCAACAGCCATTTCAGATCCACCAGAACTCAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAAT
Seq A exon
GTATGATCATGTTTCTTTAAGTATTGTTTTCTGTGGGCATGGCACTTGCACAGTAGAATGAATTAGAATGAATACCATTGTAGGAAGGCCAGTTCCTGAAAGATGGAGATAAGAGTTCACACATCTTTGTGTTGGGCTAGCATTACATCAAGCATGCGCGTTTGCTTATTAAAGAACATTGTGTTGAATGCCTACTCTGTTCTTGTTCTTGGGACATTCAAAGATGAGTGAGATACACCTTAAGGTTAGAGGCTGTGTGTATTCTCAAGGTCTCTAGGAGAAACAGTTGTGGGGATAAATAAAGATTGTGCATTAAGTGCTCTAAAATAATTAATATCTGTTGAGTGCTTCCTACCTTTGGGGGTTCTTTACATGCAATATCTCATTTAATGTGAAATAATAACTCTATATTCAAAGTGCTGGGGAAATGCAGAGAAGAAAGGCTATGTTAGTGAGAGAGAGGAAAACCTTTGGAAAGAGTAACATTTGAGCTAGCTTTTAAAGAATTAATAAAAGTTTGGGATGGATTTCATGAGGAAGGGCCCTCCTGGCAGTGCAAACTGAATGTGTTCATGATCTGAGATCTGTTCAAAGAGGGGAAAGTTTAGTGTGATGAGTCCTTGGGGTAGAGGATGGCAGGAGAGAGATGGTGAAGAGAGAAAGCATAATTCAGGCCATGAGGAGGCTGCCGGCAGTGCCACTGTGCCTGGTTCAGATGGCCTGCCTATGCTCAGACCTTGACTTATGAGTTAAATTGCGTAAATATGTTCTTTTTTAAAAAAATGTTAATGTTATAGGAGTAAAGTTGACTTACTTCTGCTGTACAACAAAGTATATCAGTTATACATATACCCACTCTTTTTCAGATTCTTTCCCCATATGGGTCCTTACAGAGAATTGAGTAGAGTTCCCTGTGCTATGCAATAGGTGCTTATTAGTTATCTATTTTATATATAGTAGTATGTATATGCCACTCACAATCTCTCAATTTATCTTTCCCCCCACCTTTGGTGACTATAAGTTTGTCTTCTACATCCGTGATTCTATTTCTCTTTTGTAAATAGGTTTATTTGTGCCATTTTTTATATTCCACTTATAAGTGATATCATATGATATTTGTCTTTCTCCAACTGGCTTCACTCAGTGTGACCTAGAGACTGTCATAATAGGTCCCTTTTTGTGAAAGAAGAGTTGCACAGGAAGCTCAGCTCAGTGATGAGCTAGAAGTGTGGGATGAGGATTGGGAGGGAGGCTTCAGAGGGAGGGGATATATGTTACATGTAGATGATGCATACTGTTGCACAGCAGAAACCAACACAACCTTGTAAAGCAATTATCCTCCAAAAATTAAATAAGAGTTTACTAGTTTCCAATTTATCATAGACGCATAACACTCCCTTAAATAACTATTTGAAAATAAGGAGTTAATTTAATTAAAAAATACTAGAAATCACAGCTCAGTAAAAAATACTAGAAATCACAGCTCAGTAAAAAATACTAGAAATCACAGCTCAGGTGATACCTTGCATGTCTTATGGTAAGTGGTGTATACATGATTGAAATTTGAATAACTCTGGAGTGGAGAACAATGTGGGCTCTGGACTGTTGGTTTGATCCTAGATCCAGACCTTACTTGCTGAATATCCTTCCTAAGCCACCAACCTTTCCAAGCCTCATTCTCCTCATCTTTAAAACAGGGACTAGAATATTAAGTGAGATATTGCCTGTAAAGCACTCAGCATGTTTGTGAGTGGGTGAATGCAATACATGAAGCGTCTCCATATCAAATTTATGCCCCCAAACTGACATCCACTAGAAATCGGCTGCAACAATTTCTCTACATCAGTGATGCTGTTCCGCAAATGTTTCTCCTCTGAACTCTACCCAGAGTCATCTTTCTTTGTATCCTGCCATCAACAAAGATTACTTTGGACCTTTCCTCACTTTAGGCAATTATCCGACACAGAATCTGCCTAAACTCTCAAACTGCGTGCCATGGTACAGAGAAAGAAGTCGCACAGCAAGAGCCTGACCCTTTGTCATTTATTTTCCATTCTTATCAGATATCTGTTCACTTGTACATGCACTTCTGAGGGTGTACATCTCAAGTCCATTTTATCTGCAGGCCTTGTGATGTCTTGCAAAAAAAAAAAGAAAAAATTCCTTCACACTAAGTTTAAGCTCCAAAAACTCATTAAGACTGTCCCTGTGGAGTTCTTCATAATGGAATTGTAACCTCTAGTTTTCCTTTTACCTGTCAGAAATTCATTTGGTGGACATGCTTTCTATCTCCCTGTGTTGGATCCTCATTTATTTCCTGGAATGTGGTGGAATTACTGGGAAAGCTGACCACAAATGTTGGACTCTGATCCCCTACTCCGGCAGTAGGTCAGAAGTATCTCCATGATGGGACTTCCCTGGTGAGCCAGTGGCTAAGGCTCCACTTTCCCACTGCACGGGGCCAGGGTTCCATCTCTGGTCAGAAAACTAAATTCATACTTGATGAAACTAAAGATTCCATTTGCAACAACCAAGACTTGGTGCAGTCAAATGAATAAATAAATGTTTTTTTAAAAAGAAATATCTCCACGATGCTGGTCAGAGCATGGCTTTCCAATGTTGGAACTTGGTGAAGAAGGAGGTTCAGGGTTTCTTTTTATAGTGACAACCGATCACTGAGGTGAAGGCATAGGACTGGCATAACCCTTCTTTCTAGTGATGAATCCAGAATTTTTATTTTTAAATGTAAATATAAAATGGTCATTTGGTAATGTCATTTTAGTACTGTGAAGAAATGAACTCACAGAAGTGGTCATTTATCATTACCGATAGGATCAAACTCAGAGAGGCCACCAAGAAATAATACAGTTTGAAGAAAAACAACCCCAGGTATAATTCAAAACATTTGGGCAAGGAAAAGCTTAGTTCCAGGATCACTGTGATGATGACATCTATTAGCAAAGCATCTTTCGCTGTAAAATCCTAGCAAAGATGTCAGCTAATGAGTGCTGTGTGACATTTCTTTTCACCAGTTGCTGTGTTAGCTCACTCTTCCTTCCGGTAACCTCACACCATCTTGCGTTTGTCTCCCAG
Seq C2 exon
CTCAGGTACAAAGAGCCGTGTGACAGAGCAACTCCTGTGAGCATGACGCCCGAGATAGAGAGAGTGAGGAGAAACCAGGAGCAGCTGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339:ENSBTAT00000061339:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(72.7=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(18.2=12.9),PF0088013=Nebulin=PU(55.2=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development