GgaINT0100178 @ galGal3
Intron Retention
Gene
ENSGALG00000007943 | Q766Y2_CHICK
Description
NA
Coordinates
chr2:18256005-18256568:+
Coord C1 exon
chr2:18256005-18256097
Coord A exon
chr2:18256098-18256478
Coord C2 exon
chr2:18256479-18256568
Length
381 bp
Sequences
Splice sites
5' ss Seq
AATGTGTGC
5' ss Score
0.36
3' ss Seq
CCTTATGCCTTATTTACTAGGTT
3' ss Score
8.32
Exon sequences
Seq C1 exon
ATTAAATACAAAGAAGAAACTCAGCATGCAACTCCTATTTCTGATCCACCCGAACTAAGGAGAATCAAGGAAAACCAGAAGAATATAAGCAAT
Seq A exon
GTGTGCCCTGTTTTAATTGTTTGCAGTCTTTGTTGTGTGTTGGAGCCTGTATGAATATTTGTGTGATGTTTGTGCTGGTTGCTGTTTGTCCACAAAGACTAATTTAATCAATTAATAATTAAGATGTTAACTCCTTAGCCTTGCACTTTAACTAACATTAATGAGAGTGAAACATTGCTATTGAAACATCAGTTGTTCACCTTTGAAACAGAGCAATTACAGTAGGGTGAGTATTAAGTATTGTGGTAGAAAGATGATGGTGTTTATTAAGGAATGATATTTTCCAGCCAAATGTAGCATGCTCTGTAATGCTTTCTAGTGCATTGATGTGCTCCTACTACTTGGAAGTCTTTGTGTAATACCTTATGCCTTATTTACTAG
Seq C2 exon
GTTCACTATAAAGAGCAGCTCTGCAGGGCTACACCTGTGAGTGTCACTCCAGAGATTGAAAGAGTCAAGAGGAATCAAGAGAATGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943:ENSGALT00000012903:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.669
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(66.7=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(25.0=21.4),PF0088013=Nebulin=PU(44.8=46.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]