GgaEX0028353 @ galGal3
Exon Skipping
Gene
ENSGALG00000007943 | Q766Y2_CHICK
Description
NA
Coordinates
chr2:18246823-18261399:+
Coord C1 exon
chr2:18246823-18246933
Coord A exon
chr2:18247261-18247371
Coord C2 exon
chr2:18261228-18261399
Length
111 bp
Sequences
Splice sites
3' ss Seq
TAATTTATTTTATTTTGCAGAAA
3' ss Score
9.37
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAAGAGTATAAGAAAGACTTGGAGAATGAAATTAAAGGAAAGGGAATGGAAGTGGGCATGGATACCCCTGATATACAACGAGCAAAGAAAGCTTCTGAAATTGTAAGCCAG
Seq A exon
AAAGAATATAGAAAAGATCTGGAGACTGAAATTATAGGAAAAGGGATGCAAGTTGGTCCATTTACACCTGAAATACAACGTGTCAAAAGAGCTTCAGAAATAGCAAGCCAG
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943_MULTIEX1-17/19=16-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.865 A=0.486 C2=0.527
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(57.1=43.2)
A:
PF0088013=Nebulin=PD(35.7=27.0),PF0088013=Nebulin=PU(57.1=43.2)
C2:
PF0088013=Nebulin=PD(37.9=25.6),PF0088013=Nebulin=WD(100=53.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGGGAATGGAAGTGGGC
R:
ACAATTATTCCAGGTCTTCTATCCA
Band lengths:
245-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]