GgaALTD0003113-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000007943 | Q766Y2_CHICK
Description
NA
Coordinates
chr2:18259975-18261399:+
Coord C1 exon
chr2:18259975-18260073
Coord A exon
NA
Coord C2 exon
chr2:18261228-18261399
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
3' ss Seq
GATTCCTCTTGTTTTCCTAGGTT
3' ss Score
9.33
Exon sequences
Seq C1 exon
TACAGCAGTGATCAGAGGCAGATGAAAGGTAGACGTAGTGTGATTCTAGACACACCTGAGCTAAGGCATGTCAAAGAAACACAAAACAACATCTCAATG
Seq A exon
NA
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943-32-33,33-33-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.527
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(31.0=27.3),PF0088013=Nebulin=PU(55.2=48.5)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=25.6),PF0088013=Nebulin=WD(100=53.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACACCTGAGCTAAGGCA
R:
TGCACCCCTTTATATGCTGCA
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]