GgaEX0028347 @ galGal3
Exon Skipping
Gene
ENSGALG00000007943 | Q766Y2_CHICK
Description
NA
Coordinates
chr2:18215593-18261399:+
Coord C1 exon
chr2:18215593-18215703
Coord A exon
chr2:18223416-18223517
Coord C2 exon
chr2:18261228-18261399
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTTTTTTCTTGACAGGTG
3' ss Score
12.82
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
GTTCTGTATAAACAAAAACATGATGCTGAGAAAGGAACTTCAGATTATGCGCATATGAAGGAGCCTCCGGATATTAAGCACGCCATGGAAGTCAATAAATACCAGAGTGAT
Seq A exon
GTGTCATATAAGAGAGATGTGCAAGATACTCACAGATACACTGAAGTGCTGAACAGGCCAGACATAAAGATGGCAACAGAGATAACAAAGATAATAAGTGAT
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943_MULTIEX1-8/19=7-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.294 C2=0.527
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=29.7),PF0088013=Nebulin=PU(59.3=43.2)
A:
PF0088013=Nebulin=PD(33.3=26.5)
C2:
PF0088013=Nebulin=PD(37.9=25.6),PF0088013=Nebulin=WD(100=53.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAACATGATGCTGAGAAAGGA
R:
TCAACTATATGTGGGTGCACC
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]