GgaEX0011327 @ galGal3
Exon Skipping
Gene
ENSGALG00000007943 | Q766Y2_CHICK
Description
NA
Coordinates
chr2:18240350-18261399:+
Coord C1 exon
chr2:18240350-18240460
Coord A exon
chr2:18243291-18243401
Coord C2 exon
chr2:18261228-18261399
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTTAAATCCTTAGAAA
3' ss Score
7.1
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AAAATATATCGCAAAGATTTTGAAGAAAGTCTTAAGGGAAGGCCCTCACTGGATTTAGACAAAACCCCAGAGTTCTTGCATATAAAGCAAGTCACTAATCTTCTGAAGGAG
Seq A exon
AAAGAGTATAGAAAAGATTTGGAAGAATGGATGAAAGGAAAAGGAATGACAGTGTTTGAAGATACGCCAGATTTGATTAGAGTTAAAAATGCGGCTCAGATACTAAATGAG
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943_MULTIEX1-14/19=13-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.042 C2=0.527
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
A:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(37.9=25.6),PF0088013=Nebulin=WD(100=53.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGTCTTAAGGGAAGGCCC
R:
TCCAGGTCTTCTATCCATTTCAACT
Band lengths:
251-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]