GgaEX0011328 @ galGal3
Exon Skipping
Gene
ENSGALG00000007943 | Q766Y2_CHICK
Description
NA
Coordinates
chr2:18251820-18256568:+
Coord C1 exon
chr2:18251820-18251912
Coord A exon
chr2:18256005-18256097
Coord C2 exon
chr2:18256479-18256568
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCGTAATATTTATTGTGCAGATT
3' ss Score
6.33
5' ss Seq
AATGTGTGC
5' ss Score
0.36
Exon sequences
Seq C1 exon
GTGTTTTATAAGAAGGTGGTAGGAGCTGGCACAGCTGTTAAAGAGACTCCAGAGATTGAAAGAGTAAAGAAAAATCAGCAGAATATTAGTTCG
Seq A exon
ATTAAATACAAAGAAGAAACTCAGCATGCAACTCCTATTTCTGATCCACCCGAACTAAGGAGAATCAAGGAAAACCAGAAGAATATAAGCAAT
Seq C2 exon
GTTCACTATAAAGAGCAGCTCTGCAGGGCTACACCTGTGAGTGTCACTCCAGAGATTGAAAGAGTCAAGAGGAATCAAGAGAATGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943-'24-27,'24-26,25-27
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.952 C2=0.669
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(21.7=16.1),PF0088013=Nebulin=PU(59.3=51.6)
A:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(66.7=51.6)
C2:
PF0088013=Nebulin=PD(25.0=21.4),PF0088013=Nebulin=PU(44.8=46.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGGTGGTAGGAGCTGGC
R:
GCTGACATTCTCTTGATTCCTCT
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]