BtaEX6064029 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22418914-22425322:-
Coord C1 exon
chr13:22425230-22425322
Coord A exon
chr13:22422100-22422192
Coord C2 exon
chr13:22418914-22419006
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAATAAATCATGCAGGTA
3' ss Score
5.52
5' ss Seq
AATGTATGA
5' ss Score
2.55
Exon sequences
Seq C1 exon
GTATTTTATAAGAAAGAAGTAGGAGCTGGCACAGCAGTAAAAGATACTCCTGAGATTGAACGAGTGAAGAAAAATCAGCAGAACATTAGTTCA
Seq A exon
GTAAAATACAAAGAAGAGGTGAAACATGCAACAGCCATTTCAGATCCACCAGAACTCAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAAT
Seq C2 exon
CTCAGGTACAAAGAGCCGTGTGACAGAGCAACTCCTGTGAGCATGACGCCCGAGATAGAGAGAGTGAGGAGAAACCAGGAGCAGCTGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339-'22-29,'22-27,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.597 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(28.0=22.6),PF0088013=Nebulin=PU(55.2=51.6)
A:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(72.7=51.6)
C2:
PF0088013=Nebulin=PD(18.2=12.9),PF0088013=Nebulin=PU(55.2=51.6)
Main Skipping Isoform:
ENSBTAT00000061339fB4655
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGTAGGAGCTGGCACA
R:
CTCAGCTGCTCCTGGTTTCTC
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]