MmuEX6099111 @ mm9
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17301377-17310411:-
Coord C1 exon
chr2:17310319-17310411
Coord A exon
chr2:17304487-17304579
Coord C2 exon
chr2:17301377-17301469
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTAAAATAAAGTATTCTGGTA
3' ss Score
-10.26
5' ss Seq
AGTGGGATC
5' ss Score
-15.72
Exon sequences
Seq C1 exon
GTATCTTATAAGGAAGAAGTGGGAGCTGGCACAGCCGTAAGGAATACCCCAGAGATTGAACGAGTGAAGAAAAACCAGCACAATATTAGCTCA
Seq A exon
GTAAAATTCAAAGAAGGAATTAAAAACGCAACAGCCATTTCTGAGCCTCCTAAGCTAAAGGGAGTTTCAGAAAACCAGAAGGACATAATCAGT
Seq C2 exon
TTCCAGTATAAAGAGCAAACCTATAAGGCCACTCCTGTAACCATGACCCCAGAGATAGAGAGAGTGAAGAGGAACCAGGAACAGCTGAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702-'31-35,'31-34,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.290 C2=0.581
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(28.0=22.6),PF0088013=Nebulin=PU(55.2=51.6)
A:
PF0088013=Nebulin=PD(37.9=35.5)
C2:
PF0088013=Nebulin=PU(55.2=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGTGGGAGCTGGCAC
R:
ACTCAGCTGTTCCTGGTTCCT
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: