BtaEX0024197 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22412868-22553865:-
Coord C1 exon
chr13:22553719-22553865
Coord A exon
chr13:22444268-22444378
Coord C2 exon
chr13:22412868-22413039
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTAATATTCTTGTTTCATAGAAA
3' ss Score
7.07
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTTTTCTTTCTTTTTTTCTTTCACTCCTAATTTTGTTAGGTCAAGTACAAAAGAGATTTTGAAGAAAGCAAAGGGAGGGGCTTCAGCATCGTTACAGACACTCCTGAACTACAGAGGCTGAAGAGGACTCAGGAACAAATCAGTAAC
Seq A exon
AAAGAATATAAAAAGGATTTGGAAAATGAAATAAAAGGGAAAGGAATGGAGCTTAATTCCGAAGTACTTGATATTCAAAGAGCAAAACGAGCATCTGAAATGACTAGTGAG
Seq C2 exon
GTGAAATATCATGAAGATTTTGAAAAGACAAAGGGAAGGGGCTTTACTCCTGTTGTGGATGACCCTGTGACAGAGCGAGTGAGAAGGAACACCCAGGTCGTCAGCGATGCTGCCTATAAAGGTGTCCATCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339_MULTIEX2-13/23=C1-C2
Average complexity
C2
Mappability confidence:
92%=100=92%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.649 C2=0.431
Domain overlap (PFAM):
C1:
NA
A:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAAGCAAAGGGAGGGGC
R:
GTCTCCTGTCCATCTCCACGA
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development