BtaINT0100727 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22415336-22417200:-
Coord C1 exon
chr13:22417108-22417200
Coord A exon
chr13:22415429-22417107
Coord C2 exon
chr13:22415336-22415428
Length
1679 bp
Sequences
Splice sites
5' ss Seq
AATGTGTGA
5' ss Score
-2.26
3' ss Seq
TTTGTTTTCCAAAATGATAGGTT
3' ss Score
5.68
Exon sequences
Seq C1 exon
GTAAAATACAGAGGAGAGATTAAACAGGCGACTGCAATTTCTGATCCACCAGAGCTGAAGAGAGTGAAAGAAAACCAGAAGAACCTCAGCAAT
Seq A exon
GTGTGATCTTAGTCACTTTTTTCTTAAGAAAGCAAACATATTGTCAACATGCCAATGAAGGGATTGTGTTTACAAAGTTTTCATGACCTTGAGTTGATTGCCTCTGCTCTCAATTGACTGTCAATTTACTGGAAAGTTTTCAGGGTGTTAGGCATTGTGGGTCCAGTCAGGCACGCCCTGCTCAGAGTTCCTAGTGACTGCAATGTGATTTTTGTCTGCAGGTTATTGTATATCCCTCTTATCTGCTCTTCGTGCTTGCAATTTCAGTGAGTCTCCAAAGGGATGCCATGGCAGTTATTGGCATCTTGTCTCTACAATAAGCTTTCCCACTCCCTTTACTCCAAATGTATTAATAAATGTATTCTTGTTCTGTAGCCTGTCCAACCCCATTTCCACTCATAGCTATCATCACTTTATTTTTGGATGATGCTGGGAAAAAATTATGAAGTGTGCCTGGCTGAATAGGTCATATGAAACAGGTCCATTTTCAGGGCATTTGTTCAGGGCTGTCAAGTTTTACTCAGACACCAATTCTTGGCCTGTTCTAACTCCTTTCTGTTATGTAATCCATGGATGCAGTTTGCTGAGAGAGTACTTTTTTATTTTCTTTTTAAATTTTTTAAAAAACTTACTTTTATTTTTCAGTTGCATTATGCAGCATGTGGGATCTTAGTTCACCAAACAGGGATCAAACCCACGCCCCCTGCATTGGAAGCGTGGAGTCTTAAGCATTAGACCACCAGGAAAGTCCCTGAGAGAATCCTTTTTCTGAAGTCATTAATAATAAATTGTGTTCTTTGGAAGAGGAAATTTGAAAATCTGTTAGATACAAAGAAATCTTTTATTCTTTAAACCTTTAAAGTCCTTTGGCCAGATTATAAAGGGAAGGCAGTTTATTGTTTGGCATTGTCCCTGACAACTGTATTTTGGAGAAATAGATACTCACCTTCTCCTGATGTATTCAGAGTCACAGTTGATGTAACTCCATTACTCTCTAAAGGGAACATGGTTCTGGAGAAGGAGGGATGGAGCACTGGGGAGCATGCTGGCCTTATGGATCACCATGGTTACTGCTTAGGCATCATGGCCAAAATTCTGCCACAGTTAATTACTAAGAAACCATAATGGTCCAGCAGCCTTCTATATGGGTAAGAATATCTTAAAGTAACATCCGTGAAGATATTTCTTACCTTACTCCTTTGTGATGAAATGCTTATTATAGCCTTACTGACGGTACACCCATATAATGAGTACATTCACAGTGATTCTCTGCCATAGGATGAATTAAAATAGAATGATTTAAGATGCAAGCATTTTAAATATGACTAGACCTCTGATGGGTCAGTGGTAAAGAATCTGCCTCCCAATGCAAGAAACACCGTTTCAATCCGTGGTCTGGGAAGGTCCCCTGGAGAAGGAAATGGCACCCCACTCCAGTATTCTTGCCTGGAAAAAAAAAATCCATGGACAGAGGAGCCTGGCAGGCTACAGTCGATCAGGTCGCAAAGTGCCGGTCATGACTTAGTGAGTAAACAACAACAAAGCCCTCTGCTAGCCTCCTTTTTTTCCCACCCCCTCAGCTTCCTATCCTTGCTTAGCTCTTTAAAATAAGTACTATGAGAGTCTTGTTTAGTTGAATTGATTCACAGTGCTCTGTTTTTTGTTTTCCAAAATGATAG
Seq C2 exon
GTTTATTATAAATCTCAGATGGGAAGAGCTACAGCTTTAAGTGTAACTCCTGAAATGGAAAGAGTAAAGAAGAATCAAGAAAATATTAGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339:ENSBTAT00000061339:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.871
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(59.3=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(55.2=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development