RnoINT0099859 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37667235-37667730:-
Coord C1 exon
chr3:37667638-37667730
Coord A exon
chr3:37667328-37667637
Coord C2 exon
chr3:37667235-37667327
Length
310 bp
Sequences
Splice sites
5' ss Seq
TCGGTATTG
5' ss Score
3.83
3' ss Seq
TCCACCTTTGTTTCTAACAGGTG
3' ss Score
11.45
Exon sequences
Seq C1 exon
GTTTTGTACAAAGAAAATGTGGGTAAAGCCACCCCAACCCCTGTCACTCCAGAGATGCAGAGAGTCAAACGCAATCAAGAAAACATTAGCTCG
Seq A exon
GTATTGTCTTGAGAAATGAAAGTGCTTCTGATTTTACAAAGTAACTCTTGCAGTGTGGCCTGCTCTTAACCCCCATCCTAGGTTAAAACCAAATAAAATGCCAGTTGTGCTTTCAGCTCCTCTAAACACCACACAACATTCATCATTGCCATTAACTAATTTGGCTTTCTTTTTTTCTTGAGAGCTGTTCTCACTAGTAGTCATAGGTTACACCTAATATTTCCCTCTCCCTCCTGCAACTGTATTTGTATTTAATAGAGAATATTGCCTCCTCGTGAGTGACTTGTAGGTCCACCTTTGTTTCTAACAG
Seq C2 exon
GTGCTATACAAAGAGAACCTGGGGAAAGCAACCCCCACACCCTTCACTCCTGAGATGGAAAGAGTCAAACGCAATCAAGAAAACTTTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:106
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(55.2=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(55.2=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAAAGAAAATGTGGGTAAAGCC
R:
CGAGCTAAAGTTTTCTTGATTGCGT
Band lengths:
182-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]