HsaINT0112263 @ hg19
Intron Retention
Gene
ENSG00000078114 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:16932]
Coordinates
chr10:21104554-21106621:-
Coord C1 exon
chr10:21106529-21106621
Coord A exon
chr10:21104647-21106528
Coord C2 exon
chr10:21104554-21104646
Length
1882 bp
Sequences
Splice sites
5' ss Seq
AATGTGTGA
5' ss Score
-2.26
3' ss Seq
TTTGTTCTCTGAAATGATAGGTT
3' ss Score
4.92
Exon sequences
Seq C1 exon
GTAAAATATAAGGGAGAACTTCAACGGGGAACTGCAATTTCTGATCCACCAGAGCTGAAGAGGGCAAAAGAAAACCAGAAAAACATCAGCAAT
Seq A exon
GTGTGATCATCTTAGTAACTTTTTTCTTACACTATCAAATGCATTGTCCACGTGTGAATGAAGGGATTGTATTTATAGAATTTTCATAACCTTGAGCTGATGTCCTGTTCTCATTTGACTAACAACTTATTTGAAAGATTTCGGGGACTTTGGTATTGTGGGTACAGTCAGGTGTTCCCCACCTCAGGGTTCCCAGTGACTCATCAGGATGACTTTTTTCTTTTTGTTTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGACTGGAATGCAGTGGCACAATCTTGACTCACTGCAACCTTTGCCTTCTGGGTTCAAGTGATCCTCCCAGCTCAACCTCCCAAGCAGCTGGGATTACAGGCACATGCTGCCACACCTGGCTAATTTTTGTATTTTTTGTAGAGACGGGGTTTGGGCTGGTCTCAAACTCCTGAGCTCATGCAATCCGGCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGATGTGTGCCACCGGGCCTGGGTGACTTTTTTTGACAGGTTGTTGTGTATCCCTTCTATCTTGTCATCTAGCTGATGGGTGCTATGGTCTCCTCAAGTCCCACAGTCGTAGCTTCTGGCATCCTGGCCCTACAAACAAACATTTTCCCTCCCTTTTCTACCAGCATGTGTTCCTGTTCTTGCGCTTCCTCCGAGCCCCACTTTCCACTTCCCACAATCATGACTCCATTTTTGGGCAAAGTCTAGGAAGAAATGATAATGTGTGCATGGCTGAATAGGTTATATTGGACAGGACCATTTTGGGGGCACTTAATAAGGGGCTGGCAGTTTTTACCTAGACACCAACTTGTGGCCTGCTCCGATTCCCTGTTGTTGAAATAATTCACGGATGCAGTTCAAGAAGAAAGTCCTCTTTTACAGTCATTAACATATAGATTGGGTTCTTTGGAAGAGGAAACTTGGAAATCTATTACGTTCAAAGAAATCTTTTATTCTTCACACCTTTAAAGTCATTTTACCAGTTTATAATGCAAAGGCAGGTGATTGATACTTTTCCTAACAACTATATTTTAGAGAAGTAGACGCTCATCTTTCCCCCATATATTTAGAGTCATACTTGATGTGACTCCATTATTCTCAAAAAGGAACATGGTTATTTAGACAAGGAGTGGACCAGTGAGAAGCATGCTGGCTTTTTAAAGGATGCCCACAGTCACCTATTTAAACACATCTTTACAAAAATTCTGCCGCAGTTAATTCCTAAGAAACCACGACCATGTAGTACCAGTCTACGGTGAATACCTTTAAGTAATCTCCATGAAGACATTTATTCTCATTTCCTTTTGTGGTTAAATATTTATTACAGCTTTACGGATGGTATGCCTATGTATTCGAGTACATCCACAGTGATTTGGACACATGTACTCTCTTATGGGATGAAATGAAATAGATTGATTTAAGATGCCAGCATTTTAAATACAACTCAACCTCTGAAAATATTTTTTGTAGTTTCCTACAAAACTTCCCTGACTAACTCATTAAAATAAATACTGTGAGCCAGGCACTGTGGCTCAGGATTGTCATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACTTGAGCCCAGGAGTTTCAGGTCAGCTTGGACAACATGGCAAAACTCAATCTCTACAAAAATACAAAAATTAGCCAGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGTGGGAGGATTGCCTGAGCCTGGGAGATCGAGGCTGTGGTGAGCAAAGATTGTACCACTGCACTTCAGCCTGGGTGACAGAGCAAGACCCTGTCTTAAATAAATAAATAAGTCTCTTTGTTGAATTGATTCATAGTATTCTATTTTTTGTTCTCTGAAATGATAG
Seq C2 exon
GTTTATTACAGAGGTCAGCTGGGAAGAGCTACCACTTTAAGTGTAACTCCTGAAATGGAAAGAGTGAAGAAGAATCAAGAAAATATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078114-NEBL:NM_006393:21
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.808
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(57.1=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(55.2=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)