BtaINT0101218 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:66998944-66999754:-
Coord C1 exon
chr3:66999569-66999754
Coord A exon
chr3:66999313-66999568
Coord C2 exon
chr3:66998944-66999312
Length
256 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
ATGTATTTATTTTAATACAGAAA
3' ss Score
5.15
Exon sequences
Seq C1 exon
GAGGAAGATGTTGATATTAAGCCTGCAAAAAAAAGTGAGGCTCCATTTACTCATAAAGTGAATATGAAAGCTAGATTTGAACGTATGGCTAAAGCAAGAGAAGAAGAAGAACAAAGAAGAATTGAAGAGCAAAAGTTACTACGCATGCAGTTTGAACAAAAGGAAATTGATGCAGCACTACAAAAG
Seq A exon
GTACCAGGCTTTCATATCCTTTCTTTCCCAAAGATAATTTCTGAAAAACAATGAAATTTAAGGAGGGATTAAAAATACATTTTAATAGCTTTCAAATCAGTGAAATGTTAATGTAAAATACTTTATAGTAAGGACACTTACATGTTCTTTACTTTGGGGGAAAATATATCTACCTCCAAATTCTATTACTAAATCACTCTCCTGAAAACATGACTACAGTATAAATGCCAACCTGAATGTATTTATTTTAATACAG
Seq C2 exon
AAACGAGAAGAGGAGGAGGAGGAAGAGGGTAGCACCATGAATGGGTCTACCATTGAAGATGAAGAGCAAACCAGATCAGGAGCTCCGTGGTTTAAGAAGCCTCTAAGAAACACATCGGTTGTAGACAGTGAGCCAGTTAGATTTACCGTTAAAGTAACAGGAGAACCCAAACCAGAAATTACATGGTGGTTTGAAGGAGAAATATTGCAGGATGGAGAAGACTATCAATATATTGAAAGAGGAGAAACTTACTGCCTTTATTTACCAGAAACTTTCCCAGAAGATGAAGGAGAGTATATGTGTAAAGCAGTGAACAGCAAAGGATCTGCAGCTAGCACCTGTATTCTTACCATTGAAAGTAAGAATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921:ENSBTAT00000039125:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0767911=I-set=WD(100=73.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTGAGGCTCCATTTACTCA
R:
CTGGCTCACTGTCTACAACCG
Band lengths:
292-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]