BtaINT0101223 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67021459-67022882:-
Coord C1 exon
chr3:67022841-67022882
Coord A exon
chr3:67021657-67022840
Coord C2 exon
chr3:67021459-67021656
Length
1184 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TCACCTATTTTATAAATTAGGAA
3' ss Score
6.55
Exon sequences
Seq C1 exon
ATTGAGGACATAAACAATACGGAAACTGAATCAGCACCAGAG
Seq A exon
GTAAATGGACATTTCCTTTAATGAAACATTCACCTAAAATTATCCAGTTCACAAATAATCTTTCAATTAAAAAATTAAAAGAGTTTTATTATGAATATAGCAACAATAAAAAGGACAAAAATATTTTGCAAAGCAAGGTCATACTTTTGCACTTTCAAACACTATAGCTTAGTGTTTATGGAGAAAAGTATGTTTTTGCTCTCATGGTTCAAGTGGAGGCACAAGTCTGAGTTTGAAATACTCTGCCAAGACTATATATTTCTTGAACTGTTACTAATAGTTGAGACTCTTGAAAGCTAACGTTGAAAAACGCAGTTTCTTTTCATCGTTTGTCTTCTTTCCTCAGAGTTCCTGATAGTTTGTTTTGGTTATTACATGATAGCAGAGAGTACAGTATCTATTACCATGAAGGAATGTTCAACAACCACAACAGTTTTAGATCTCTTCTAATCTAACATACAAAGTTAAATATCAATCAATTTGATCGTGTGCCTAGACGTACAGACAAATAAATTGGAAGCAGTTTTACTTCAGGGGCATGTGTTACAAATTATAATTCTTCACTTTGTTTTTGAAAAAAGTTCGGAGGCAGTAATAGATGATATAAAAGAACTAATTAAAATGAATTTCAAAAACAAGTTTAAGAATATGTGAATAGGACCAAATACCAAAGAGTTTTGTCTATAATATAAATGTTTTCTAGATCACTTGGAAATACTGTTTTTTTTTTCCTCGCTAAATGTTGGTTTTATTAAATATTTAAGAACTTACATGGAGAGAAAAGCCAAATGCAGAAAGCTTTCTTGTGTGTTTAAACTGAATCTATCCACCATCAAATTGATTGAGAGTATGCTCACATGCACATTACCTTTTGTGGGATGAATGCATGATAGCGAAATTTAGATAATGTCACATGGTTTTATCTGAACACTGTATTAACACCATCTTCTAGGAAAAAGGATGCTTCTAGAACCTTGTCAGCAATGGATTTCAGTAAGATTAATTTATAATGTACAATGAATTCAGAGAAAGAGCTATTTAATAGAAATCTGTAAAAACTGTATTTTTATTCTTCATAGCATTGATAGCAATGTAATGAAATCCACCAATGATGGAAGTAATGTCCCGTGGAATCTAAATTTTGATTTGGAAGAAATATGCTAATCACCTATTTTATAAATTAG
Seq C2 exon
GAAGGAGATGAGTCACTGCTTGTAACAGTGGTACCTGTCAAATCACACAAAACCTCTGGAAAAATAAAAAAGAATTTTGAAGATATAGAAAAAGAACGAGAAGAGAAGGAAAGGGTCAAGTATGAAGAAGATAAAAGAATAAGATGTGAAGAGCAACGCCGATCTCTCAAGGAAGCAAAGTGTCTTTCGTTGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921:ENSBTAT00000039125:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.439
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACATAAACAATACGGAAACTG
R:
CATGACCAACGAAAGACACTTTGC
Band lengths:
238-1422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]