GgaINT0037485 @ galGal3
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19629241-19630598:-
Coord C1 exon
chr8:19630557-19630598
Coord A exon
chr8:19629436-19630556
Coord C2 exon
chr8:19629241-19629435
Length
1121 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATC
5' ss Score
7.05
3' ss Seq
ATGAATATCTTTTTGGACAGGAA
3' ss Score
5.8
Exon sequences
Seq C1 exon
ATTGATGACTTTAACAATACGGGAACTGAATCAGCAGCAGAG
Seq A exon
GTAATCAGCTTTTTTTTAAAGAAATGTTCACCTACATTTTTATTCACTTTGCTTTACTGTTGTAATATGGGCTGGGAGAAGTTCCAAAAGGGCACAAGTATTTCACTGCAGTTCAACCAAGGACCTAAGAACTTTTTAAAGCATGCAGAAATGTTTATCTGCACTTAAAACTCAATTTATTTAAGTTTTAGAGTCTGAAGCATGAATAATATGTTGAAGGGTTCAGAACACCTCAAATACAGACATTTAAAGCCACCACAGTGGTTTGAGGCAGGCTGATAATGATACTCTAAATCCTCTGGCTTTGGAAAGTATCATAAAGCTCTTTGCCTTAAGCTTGTCGTTATAAGGGGGTTCTGTCAATATACTGATGTTTGAACAGTGGTCTCAACTTCTTGGTAACTTTTTTTTTTCCTCCCTCAAATGAACTCATTTAACAGATGGGTTTCTATTTTAAATCTTGCAAACAAATATATCATTTCAAAAATCTCGGCTTGAAGGTCCCATTGTCTGTCACTAACACAAAATCACATTCTTATTACAGTTAAAAAAGAAAACACCACCAAAACCTATTACTTTTAAGTTATTTGACAGTGTCCTTGTTATCATGGTACCTAACTTAAAAAAACATAAAATTGGTTGAAGCACATTCTGGCAAATAATTTATGAAAATAATTTTGAAGCAGCGAAATCCTTCAAAAGCAAATTAATCTGCTTGACAAAGAACATCCTTCTAGAACTGCCACCTTATTCCAACCACTGTATCTCTCTTACATAGTAAGAAGTAGACCGCCACTACAATTTCTACATATTCAGAATTCCACCTGTTCTTATCTTATCCACGTAATGAATATTTATAAGAAATAGTTAATGAAAACATGTAAAGAAATGACACCTTGCCAGCAGTTATGTTTAAAGTATAACTCAGTCTTGATGCTTTCAGATGTTACAAGAAAATTAGCGACTGTCAGAGGCAGATAGATTTATTCTTGTTGTTAATACTCACTACAAGTAACTGTTTTGGAACTTTTGGTGCACACAGGTAAAAAACCAACAGTTTAAGAAGTAAGTTACCTGTAGGTCAAGCTTTATGAAAATATAATGAATATCTTTTTGGACAG
Seq C2 exon
GAAGGGGATGATTCGCTACTGGTTACGGTAGTGCCTGTAAAACCCAACAAAACACCTGGGAAGATGAAAATAAACTTTGATAACACAGGAAAAGTAAGAGCAGAACAAAAAAGCAGACCGGATGAAGAAATGAAGCTTAAATATGAGGAACAAAATGAATTCCTTAAGGAAAACAAGTGCCTTTCATTTCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.877
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGACTTTAACAATACGGGAACTG
R:
AGGCACTTGTTTTCCTTAAGGA
Band lengths:
222-1343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]