GgaEX0013101 @ galGal3
Exon Skipping
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19628989-19632263:-
Coord C1 exon
chr8:19632115-19632263
Coord A exon
chr8:19629241-19629435
Coord C2 exon
chr8:19628989-19629162
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATGAATATCTTTTTGGACAGGAA
3' ss Score
5.8
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
GAACTGTTAAAGGCAAGTTTGCAGAAATGGAGAAGCAAAGACAAGAAGAAGAGAGAAAAAGAACAGAAGAAGAAAGAAAGCGCAGAATTGAGCAGGATATGATTGAGAAAAGGAAAATTCAAAGAGAATTAGCCAAAAAAGCACAGGAG
Seq A exon
GAAGGGGATGATTCGCTACTGGTTACGGTAGTGCCTGTAAAACCCAACAAAACACCTGGGAAGATGAAAATAAACTTTGATAACACAGGAAAAGTAAGAGCAGAACAAAAAAGCAGACCGGATGAAGAAATGAAGCTTAAATATGAGGAACAAAATGAATTCCTTAAGGAAAACAAGTGCCTTTCATTTCTCACG
Seq C2 exon
GGTGAAAATCAGGACAGTGAAACACAGTCGTCTCTGTCTCCTGGTAAGCTGAAAGTAACTTTTGAAGAACTTGAAAGACAAAGACAGGAAAACCAAAGGCGGCAAGCAGAGGTAGAAGCAAAACAGCGCTTAGAAGAGGAAAAACGTGCCTTTGAAGAAGCTAGACAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.877 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGCAGAAATGGAGAAGCA
R:
TTGCTTCTACCTCTGCTTGCC
Band lengths:
255-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]