DreEX6049222 @ danRer10
Exon Skipping
Gene
ENSDARG00000057317 | nexn
Description
nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
Coordinates
chr8:18490795-18496417:-
Coord C1 exon
chr8:18496269-18496417
Coord A exon
chr8:18491087-18491287
Coord C2 exon
chr8:18490795-18490974
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATAATTCTGCTTTTTCGCAGGAA
3' ss Score
8.6
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GCAGCGTGAAGGGGAAGTTTGCCGAGATGGAGAAACAGAGGCAGGAGGAGGAGAGGAAGCGAACAGACGAGGAGAGGAAGAAGCGAGCCGCGCAGGAGGCCATCGAGAAGGCCAAGATCCAGAAGGAGTTGGCCAAGAAAGCCGAGGAG
Seq A exon
GAAGGTGATGACAGTCTTTTGGTGCGAGTGGTGCCTGCGAAATCGCAGAAACAACCAGGAAGAATCAAAATCAACTTCGAGGACATGGAGAAGAGCCGAGAAGAGGAACTAAAGAAACGAACCGAGGAGGAGAAGATGAAGCGGTATGATGAAAACCGGCGGTCCGTCCGAGAGTCTAAACGTCGCTCCGTTGTTGAACAG
Seq C2 exon
CTGGACGATGGAGAGCCTCAACCCAAAGAGAAAGAGCAGGTGACTCCTGGAAAATTGCGTCTGACCTTTGAGGAACAGGAGAAAGAGCGACAGGAACAGCAGAGAAAACAGGCGGAGGAAGAGGCCCGGCGAAGACTGGAAGAAGAAAGAAAAGCTTTTGAAGAGGCCAAGCTGGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057317-'9-13,'9-11,11-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.970 A=0.973 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGAGGCAGGAGGAGGA
R:
CCCAGCTTGGCCTCTTCAAAA
Band lengths:
294-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]