BtaEX6016953 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67021189-67022882:-
Coord C1 exon
chr3:67022841-67022882
Coord A exon
chr3:67021459-67021656
Coord C2 exon
chr3:67021189-67021365
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCACCTATTTTATAAATTAGGAA
3' ss Score
6.55
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
ATTGAGGACATAAACAATACGGAAACTGAATCAGCACCAGAG
Seq A exon
GAAGGAGATGAGTCACTGCTTGTAACAGTGGTACCTGTCAAATCACACAAAACCTCTGGAAAAATAAAAAAGAATTTTGAAGATATAGAAAAAGAACGAGAAGAGAAGGAAAGGGTCAAGTATGAAGAAGATAAAAGAATAAGATGTGAAGAGCAACGCCGATCTCTCAAGGAAGCAAAGTGTCTTTCGTTGGTCATG
Seq C2 exon
GATGATGAACTAGAAAGTGAGGCAAAAAAAGAATCACTTTCTTCTGGAAAATTGAAACTGACTTTTGAAGAATTGGAAAGACAAAGACAAGAAAACCGAAGGAAGCAAGCTGAGGAGGAAGCAAGAAAACGTTTAGAAGAAGAGAGGCGTGCTTTTGAAGAAGCAAGGCGGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921-'8-10,'8-9,9-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.439 C2=0.814
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGACATAAACAATACGGAAACT
R:
CATTTGCCGCCTTGCTTCTTC
Band lengths:
218-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]