GgaINT0037484 @ galGal3
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19630557-19632263:-
Coord C1 exon
chr8:19632115-19632263
Coord A exon
chr8:19630599-19632114
Coord C2 exon
chr8:19630557-19630598
Length
1516 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
ATGAAATTCTTATTTAATAGATT
3' ss Score
5.65
Exon sequences
Seq C1 exon
GAACTGTTAAAGGCAAGTTTGCAGAAATGGAGAAGCAAAGACAAGAAGAAGAGAGAAAAAGAACAGAAGAAGAAAGAAAGCGCAGAATTGAGCAGGATATGATTGAGAAAAGGAAAATTCAAAGAGAATTAGCCAAAAAAGCACAGGAG
Seq A exon
GTATGGTGGTCTGATCAAAATAAGGTATAATTGTAAACAAATTAGAAAAAGTTTTGTATTCAGCAAAAGTATTTGGCTTTAAGATTTCTGACAGTAGTGGTTTACATGGGAGATACTGAATGGGATTGAATTAAGGAAGAAAGTGAAGATAAATATTCTCTAAATAATCTTCAGGGTAACCATTTTTTAAGCTTGAGTTACAGACAAAAGTAGGCAGGCATAAAATGCGGTAGGAGTAGAAACCAGGCACATGCTGGGGTTTGTCAGCGTTTATAGAATTTACTGAACTAATCTGAAAATATTTCTTTTATTTACGAACCCTTACGTTAGGCAATTTTTGCTTATAAATTAGTGAGTGTAGTTCAGTGATAGATAAATTGAGGCAAGTAAGAAGTATGAAAATGACCTCATCAGGCAAATATATGAAGATAGAAATAAACAAAAAATCATAATTCAATCACAGAACCACAGAATGGCCCGGGTTGGAAGGGACCTCAAGGATCATGAATATCCAACCCCCCCGCCGCAGGCAGGACCACCAGCCTCCCCATTTAATACTAGACCAGGCTGCACAGGGCCCCATCCAACCTGGCCTTGAACACCTCCAGGAACGGGGCATAAGTAACTCAAGTCATGTTTGATTCCTTCATCACTTTGTGAGCTGTTACTGCATCTACATGTAAACAGACTGTAACTGTGCCAATAGAGAAAATCTTGTCAGTTGTAAAATTTTACCTTGGGGCATCATATTAAATTCCATTTGTAAGTTTTCTTCAGTGCTGCAAATACTGCAGTGCAAGTAAACATTGAGATGATAGACCAGCACCATAAGATTAAGTTTTCATTTATTTTACAGAAAGATAGGAATATTTAATTTGGGGTTTTTTTTGTTTTTGTTTTTTGTATGAAAAGTGGTTTGGCTTTTTGTAAGAAAAGAGAAACAGTACTGCAGGATAACTCAGTTTTCAATAAGAACTTATACAGTATTTTCTACTTTCAATACTGTTACATTTCCTGCTAAAAATACAGTTTTATCCAGCAAATATTTAGTTTACTTTGAAAAACAGAATTATGTATCATGGAGCATTTTAGAAAGAATGTTACTGTATAAAACCAACACTATTGAGACACCAAATACAACAGACTTTTGCAGGGAGTTGAGGGGAAGACAATGTCACTGAGATCAGACATACTTTTGCTTTCATGGTTTTTTGTTTGTTTTTAAATACAATTATGGAATGCTCACATGAAGAATGAACACCTAAAGCACTTTTCTCGGTTCATCACTGAAGTGTTAAGAATGCTGCAGCATGCTTTGTGTACGATGTCACGTTTCCTGTTCCTCAACTTGCTAACCTATCTGAAGTATTCCACCAAAGGTTCAGTCGTTATCGTCTCTGTGAATATAAGTGCTACATACATATCACTGACACACCAAAAAATTTCCAGTTCTTTGTTTGAAAATCTAAGGCAAAGAGCCAAATTAATGTAATCCTATGAAATTCTTATTTAATAG
Seq C2 exon
ATTGATGACTTTAACAATACGGGAACTGAATCAGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]