GgaINT0037486 @ galGal3
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19628989-19629435:-
Coord C1 exon
chr8:19629241-19629435
Coord A exon
chr8:19629163-19629240
Coord C2 exon
chr8:19628989-19629162
Length
78 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
3' ss Seq
ATTTCATTTTTCTTATACAGGGT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GAAGGGGATGATTCGCTACTGGTTACGGTAGTGCCTGTAAAACCCAACAAAACACCTGGGAAGATGAAAATAAACTTTGATAACACAGGAAAAGTAAGAGCAGAACAAAAAAGCAGACCGGATGAAGAAATGAAGCTTAAATATGAGGAACAAAATGAATTCCTTAAGGAAAACAAGTGCCTTTCATTTCTCACG
Seq A exon
GTAAACTGCTCATCTAAAAATACCTAAGCAATAAACATGTGTTATTTAAAAGGTAACTATTTCATTTTTCTTATACAG
Seq C2 exon
GGTGAAAATCAGGACAGTGAAACACAGTCGTCTCTGTCTCCTGGTAAGCTGAAAGTAACTTTTGAAGAACTTGAAAGACAAAGACAGGAAAACCAAAGGCGGCAAGCAGAGGTAGAAGCAAAACAGCGCTTAGAAGAGGAAAAACGTGCCTTTGAAGAAGCTAGACAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.877 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCGGATGAAGAAATGAAGCT
R:
CCGCCTTTGGTTTTCCTGTCT
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]