DreINT0103975 @ danRer10
Intron Retention
Gene
ENSDARG00000057317 | nexn
Description
nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
Coordinates
chr8:18490795-18491287:-
Coord C1 exon
chr8:18491087-18491287
Coord A exon
chr8:18490975-18491086
Coord C2 exon
chr8:18490795-18490974
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
AACTTCAATGTTTAAAAAAGCTG
3' ss Score
0.12
Exon sequences
Seq C1 exon
GAAGGTGATGACAGTCTTTTGGTGCGAGTGGTGCCTGCGAAATCGCAGAAACAACCAGGAAGAATCAAAATCAACTTCGAGGACATGGAGAAGAGCCGAGAAGAGGAACTAAAGAAACGAACCGAGGAGGAGAAGATGAAGCGGTATGATGAAAACCGGCGGTCCGTCCGAGAGTCTAAACGTCGCTCCGTTGTTGAACAG
Seq A exon
GTGAAGGAATTTAAATAGCAATGTGGACTGTACTATAAAAAATGTTTTTTGTTTTGACAACGTATGAAAAAATGACACACTTTTGACTAAAAAACTTCAATGTTTAAAAAAG
Seq C2 exon
CTGGACGATGGAGAGCCTCAACCCAAAGAGAAAGAGCAGGTGACTCCTGGAAAATTGCGTCTGACCTTTGAGGAACAGGAGAAAGAGCGACAGGAACAGCAGAGAAAACAGGCGGAGGAAGAGGCCCGGCGAAGACTGGAAGAAGAAAGAAAAGCTTTTGAAGAGGCCAAGCTGGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057317:ENSDART00000148802:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATGGAGAAGAGCCGAGA
R:
CCTCTTCCTCCGCCTGTTTTC
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]