RnoINT0100570 @ rn6
Intron Retention
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257466908-257467343:-
Coord C1 exon
chr2:257467155-257467343
Coord A exon
chr2:257467079-257467154
Coord C2 exon
chr2:257466908-257467078
Length
76 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACT
5' ss Score
6.06
3' ss Seq
TAACAAGTTTGTTTTCATAGGAT
3' ss Score
6.08
Exon sequences
Seq C1 exon
GAAGGAGATGACTCACTCCTTATAACAGTGGTCCCTGCCAAATCATACAGAGCAGCTGCAAACAGGAAGGATCCTGAGGACCTGGACAGAGAACACAGGAATGGAAGGGTTAGTCAGGAAGAAGAAAAGACAAGACATGAAGAAGAGTGCAGAGCTCTCAAAGAAGCAAAATGCCTTTCATTGGTCATG
Seq A exon
GTAACTTTTTTACAAGAACAAATCAAAAGTTAGTTTAACAACAATTGCCCTTTGGATAACAAGTTTGTTTTCATAG
Seq C2 exon
GATGATGAAACAGAGGCCAAAAAAGAATCACGTTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAACCGCAAGAAGCAAGCAGAAGAGGAAGCAAGACGGCGCTTAGAAGAAGAGAGGCGTGCCTTTGAGGAAGCAAGGCGGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512:ENSRNOT00000016967:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCTCTCAAAGAAGCA
R:
TTCTTCTAAGCGCCGTCTTGC
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]