GgaINT0037486 @ galGal4
Intron Retention
Gene
ENSGALG00000008945 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr8:17828758-17829204:-
Coord C1 exon
chr8:17829010-17829204
Coord A exon
chr8:17828920-17829009
Coord C2 exon
chr8:17828758-17828919
Length
90 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
3' ss Seq
TTATACAGGGTGAAAATCAGGAC
3' ss Score
-1.85
Exon sequences
Seq C1 exon
GAAGGGGATGATTCGCTACTGGTTACGGTAGTGCCTGTAAAACCCAACAAAACACCTGGGAAGATGAAAATAAACTTTGATAACACAGGAAAAGTAAGAGCAGAACAAAAAAGCAGACCGGATGAAGAAATGAAGCTTAAATATGAGGAACAAAATGAATTCCTTAAGGAAAACAAGTGCCTTTCATTTCTCACG
Seq A exon
GTAAACTGCTCATCTAAAAATACCTAAGCAATAAACATGTGTTATTTAAAAGGTAACTATTTCATTTTTCTTATACAGGGTGAAAATCAG
Seq C2 exon
GACAGTGAAACACAGTCGTCTCTGTCTCCTGGTAAGCTGAAAGTAACTTTTGAAGAACTTGAAAGACAAAGACAGGAAAACCAAAGGCGGCAAGCAGAGGTAGAAGCAAAACAGCGCTTAGAAGAGGAAAAACGTGCCTTTGAAGAAGCTAGACAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945:ENSGALT00000014545:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGACCGGATGAAGAAATGA
R:
CCGCCTTTGGTTTTCCTGTCT
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]