BtaINT0101757 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021945 | NID2
Description
Bos taurus nidogen 2 (osteonidogen) (NID2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102065]
Coordinates
chr10:44905717-44915214:-
Coord C1 exon
chr10:44915071-44915214
Coord A exon
chr10:44905837-44915070
Coord C2 exon
chr10:44905717-44905836
Length
9234 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TCTGTACCTGACTGCTGCAGATG
3' ss Score
6.93
Exon sequences
Seq C1 exon
TGATCACCCCACCTCCCAACCCCTGTGAGGATGGCCATCATAACTGTGCTCCCGCCAGCCAGGCCCGGTGCATTCACCATGGAGACGGCTCCTTCAGCTGCGCCTGCCTGCCTGGTTATGCCGGAGACGGGCACCGGTGCACCG
Seq A exon
GTGAGTACCTGTGGGTGGCTCAGTGACCCTGAAAGTTGCTTTGGATGCACATCCCCACATCCCCAGGGCCTCTCAGAAACCTCTCCTTTCCTTTGACTCACACCCCCTGGAACTGCTGGAAGAGAAAAAAAAGGTGCCCTTTGAGTCAGAGGCCAAATGTGATTACCTTGGCACCAGACTGTTGAGCGAGTATGGTTGTCCTTGGAGGAGACGTGCCTGGATCAGTGCGGAGCTCCTGCCAGCTCGCAGTCTCCTGTCCCCTGGAGCTACTGTAGCTCAGAGGGATGCGAGGGAAAATTGTATATTCCCCTGGGAGGAAGTCTCCATCCTTCAGTCTCTTTAGCTAATGGCTTAATTCAGCACTTCCAGTCTTGCCCAATTTTTAGTTGCTATTCCCCTGCTCGAAGTGGTATTTGAAGCAATCTCTAAACATACATATAATTCTTTCTGTGTAATTTATTCCTTTGTCTCTCTCTCTCTCTCTGAAAGGGGAGAGGGAGAGAGAGAGAAGAAAAATCCACAGATATAAAAGGATATTAATGCATACCTAAGTACTCAAAGATTTCCTTCCAGAAATCTAACTGTCTTTAAGACTTTATACCATATTTTGTAAAATCACTAAACCAGAAAGCAGGACTGACTGTTCAAATTTAACTTCAAGATGTATGAGGTTGTTACTGAAAAACTAGGCATAACACTCTGATTATAAATGTTCATGAAACTGGGATTAGTAGTACCTTAATATAGAGATCATTCAGTAAGCCTACATAATTCACTAAAGATCTTCATGTCAGTAATACACACAAATAATGGTTAAATGAGATACTTGGAAATGAGAGGATGGTGGGAAAGGAATCAGTTTTAGGAACAGAAATCGAAAATGCTGTTTTCAAATCGCTTTTTGCATCTGGCCCCGGAATACCTAGGTGCACTGAGCAAATCTGCTAAGAACAGCCTTATAACTCAGGACTTGCCGTTGTTCAGTCCCTCTTGTGTACGACTCTTTGTGATCCCATGGACTGCAGAACGCCAGACTTCCCTGTCCTTCACTATCTCCTGGAGATTGCTCAAACTCATGTCCATTGAGTTGGTGATACCATCTACCCATCTTGTCCTCTGTCGTCCCCTTCTCCTCCTCCTCAAACAGAGAAGCCTGTTCTTAACTAGATCAGATCTTAAACAGATCGCACAGCCTGGCCCTGCCCTCCTCACCAGCCCGTTGGCTTCTCCTCCTTCCCTTTCCCTTTGGTTTCATCTGGATGGGCTGAATGGACCAGCAGCCGAAAGCCACATGTTCTTGACAGAACAAATATGTCAGGGCAGCACAGCCCTCTGCTCCTTTCCAGATGTGGGGCTTTTTGAACCTGGCTCTTGAACGTTTCCACTTCTGATGTACAGAAGCTTAGCTGTATGGCTTTCTTGAAAACACAGTTTATATTGAAATGACCCCAAACTGTGACTCAGTTCAGCCCTGAGGTGGTTTTTTCTCCCTAAAAACACCCCCAGGTTTAGACAGAGCTCAAGGGCTTTTCAAGTTAGGATGGAGTAGAGGTGTAAGTCACGGATGGTTGTCCCACTTGACAACAGACACTCTCTACAGATGGAGGCACCCTCTAGGTCTGGGGTGGTGGGGGTGGGAGGAGGCATCAGGTGATGCACACAAACCTCTCACGTTTCTGCTGAGCTCCACAGTAGGAATACTGCTTTTTCCTCCCTTGTAGAAACTCATCATTCAGTTTGACTTAACGCACTACTGGCTCTCAGAAATGAGAACCAGAGAAAAAAATCTTGTCAGTAGAATTTCATATTTAAACATCTGGCTGCTCAGGTCAGTAGAATTTCATATTTAAACATCTGGCTGCTCAGGTCAGCTGAGATAGTGTTTCGAAAGCATTTCATTCCTTACGTCTTTGGTTTAAAACAAAGAAGTTGAAATTAATCGCCGCTTAGATGTGGTGTGGATTAAAATCAGAATGTTAATGTAGGTGAGCTGCTGCTTGTCCTAACCCCTTCGAGAATCATTCTCCCTTCTTTTAACTTCTGCTTGTCTCGGAGGACTTGGGTTACCTTCTGGGGTTGTAGTAGAACCTTGAAATTAGCTACTTTTCCATGCTGGGAGTTTTCTAGGATTGTCATTCTTTGCTATGGTTGCCCTCTTTCTGATTTCAGGGACATTTTCAATTGTCCCTATTTCATCTCTGCTTCTCTACTTTTGGGATTCTCTCTGGAACCCACAAACTTAAATGTAGGCCAGGCCAATCTGTTGCTTCCCCAGTGTATTAGTAATCTATTGCAGCATAGCCATTTACCCCAAACACGTAACAGCTTAAAACAGTACACAGTATTATTATGTGTATGGTCTAGCTTATTCGTTTGCTTTAGGATCTTCACAAGGCTGCAGTCAGGGGGTCTGCCAGACCTGGGGTCTCATCTGGGGTCCAGGTGGGGAAAGAGGCTCACGTGGTTATCGGCAGGGTTCCTTTCCCCAAGGACTTTCAGGTCCCTGCTGGCTATTGCCTGGAGGTGACCTTCAGCTTCTTGCCACTCAGACATCTCCCACAAGGTAACTTTCTTTATCAAAGCCAGCATCAGGAGGCCAGGTAGCAGGTTGGCAGTGACCATAAAAGTGATGTCTCCTCAGTATTGCTTTAGTGTCTTGGTTGGAAGCCAGCTACTCAAAGGAAGGGGATTATAGAAGACCCTGAATACCAGGAGGGAAGGGATCTTTGGGACCATCTATGAGAGGCTGCCTCCCATAGTCAGTTACCCTGTGGTTGCCGTCCAAGCTTCGGGGCCGTAGAAAATAACAATCATTTTCCTAAAGACCTCTGCTGTGCATAAATCAGGCTGGGCTACTCATGGAGGTGGCTTGCAGGAGAAGTGTATAAACGTGTGTGTGTGTGCATGCAGTTTTAAAGGCATGACACAGTGTGCATGTGTCCCAGTGACAACTGAGATAGAGAAAACAAGAGAAAAATGGCGATGAAGGCTCTGTTTTGTGAAGTGAGCACACTTAAAGCGCACATTCGTTTTCAGTCCATCAAACTGGCATTGAAAGAGTGTGTGGGTTTTCCTTTCTCCAGCCAGTTTGTCAAAAACCAGTTTCCCTGGGGAGGCTGCCCTTGGCTTTGGGTTCTCGACCTAGCCTGAGTCACAAGCAGGAATTATTTTTATGCAAGTAGAATGAAATCTTTTCCAGCTCCCCTCAGTCAGGGTTGGTTTCAACCCTGCGTTGGCGTGAGCTGGATATTTCTCAGGCACGTTTGTCCCTGCAGCTCTTAGTGACTCTGCTGGATGGAAAAGCAGATTGTTGTGAGCTGAGACCTTTTCAGGGAGGAGCACATGTGAGTTGAGGAACTGGGTTACAGATGGCCCATCACCCACAGAAGGGCCGTGATGAGGGGTTCTTACACTGTTCTCGCACGTGGCTTTTGTGGGAGGAGTGCAGACTCTGGATAAGGTGTAGTAAAGTTGGTGTGGCCACAAGCGATGTAGAGACCAAGGCTTGAAGGGAAGAAGCTGCCTCTACTCAAAGGTCCCAGAGAGCAGGTCACTGCATGCCATACAGGACCCTATGGGCACAGCCAGAATCCGGGTTCTGACTGAGTAGGTGGGGAGTGACAACTCATGGGCCTTCAAGCCTTTGTTGGGGTCTGGAGCGGGATCAAGGAGAGTTGGCGCCAGGGAATTTCACTGGGTGGTTCAAAAGCAAACCAGGGGAGGCACGGGGGGAAAGCTAGAGTCCAGGGGCTGGCTTTGTTTTGAAGGGATTTCAGCTGGGTTTTGGGTGTGGATTCAGAATTAAGGCAGGAAGAATGTTGAAGCACCAAAGCCTGCACTCAAAATAGAGAATTTTAAACACATTTTCCAAAGAGGTTTTTTTAGCTGCTTGGGAGCAGATAGAATGGAGAATTGCGCTGAGATTAAGCCATATGGCATTGTCTGACTGGCCAGAGACTCTCCTGTGCCTTGAACCTTGCTGCCTTGACCTGCCAGCACCTGAAGACCCTGACAGTGATGGTTAAGCAGGCCCCTGTCCCCAGGGGTATAAGAAGAAACTCCTCCCTTGCTAAGGAGTTCAAAGTGCCTTTATACTTTCTGCTGACACCTGATCCCCTGGGAAGCTAGGAAGATTTCTCCTTTACACAAAAGCTCTGGTTCCCCCTACACTCCTCAGGGTTGGCCTTCTGAGGAAGGTGGGTAGCCTGCTCTGCACTCAGGCCCTGGAGTGGCTGGTGAGGCTCCAGTTCTCTGACATGGTGCGAGAGCCTCCAAGGAGGAGATGGGAGCTTGCTTCAGGGAATCTTAAGCTTCTCCAGCTTTAGGGGACAGGAGTTGTTCACCTGTGATGTTCTCAGTCTCTTCAGAGATTCTCCCTGTTCATTCGTAAGTTAGTCTCCCCATGACTTTGCCTTTGGGAGGATGGCTGCTCTTTCACATCTGGTTGGCATTCCTAGGCCATAGGCTTTAAGAACACAACTCAGAACCTCTGGGGAATCCTCTTTCTCTTTGTTCAGAAAAGTAATCACAAGCAACTGATCTATGGGTTCTAGAAATAGGCCCTGTGTCTCAGGAATTCCTGCTTCCTGCCATTGCCTGGGGTTCCTGTTACCATGAGAAGTACTTTTAGCATATGCATTATGAATAGCTTTAATTTCCTGCATTTGGTTGGATGTTAATTTTTGCAGTTTGGTTTTATAGCATCATAGAAGGCACAAGGAACTGAATGGGCACCGATTCAGCCAACTGGACATTGGTATTGTCCTTCTGAACAGACAGGGCCAACCTCAAAGATAATGAAACATGACAATATACAGCCCTGACTGATCAGACTGGAGATAAGTTTCTGGTTGTTGTAATTAATGTGGTTTCAGTTCAGTTCAGTTCAGTCCAGTTGCTCAGTCATGTCCAACTCTTTGCGACCCCATGAATCGCAGCACGTGAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAGACTCACATCCATCAAGTCACTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCTCATGAAGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATTTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAACATCAATTCTTCGCTGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCATAGGAAAAACCATAGCCTTTAGTTTTGGTTAACTGAGGAGCCTACCACTAACCTTGCAGATAAATTTATAACCACTTTCCTGCCATTGTCAGTGAAAGGAAGGCATCCAGGCAGGCCAAATGCTCATCTAGGCAGAGTCTATCTAGGTGGCATTAACTTTGGTCGTGTCAGGCAGTCAAGGTTTTTCAGACTTCAGAGTGAAGTAATTTATGGGGGCTAAATGCCGGATCCGGATGATAAGCAGTGTAAGTGATTACATTGCTAATTATGATGTCAGAGATTTTCCTTTCCCCTGAACAGAACATCTGTGCTGTGTCCAGTACATCTACTTACTGGTAGATGGGAAAAGCCCTTAGTGATGGAGAGGTGGCTCAGGGTAACATGGTCACAGCAGGGGTGGCACTGATCACCCCAGGAGAGAATTCATCTGGGACCTGGGAGGCTGGGCGAGGAGCTATGTTTGTCCCTAGCTGACTGACGTCACATTCAGGGCTGTAAGTCTCCAGCTTCCAGGGTGCCATGTGTCTCTGTCACAAGCTGTACAGAATCGACATAGTGCATTCCGTGACTCCTGTTCTCTTAGTTTAATGCTGATCATCCTGTCCCATGTTTTTTCCCTCTTCACACAATTTTAAAACTTTTTTTGTATATTAGCTCGGGTGTGACTGCTTTATTTTCCATTGAGCCTTGATCAGATCCACCTCCTTGATCCCCTCTTTGCTCAGGAAGACTTCCTGTCTCTGAAGATGGCTTATCTCAACTACTGGCCATTGGTTTCAGCAGTTAGATTGTCAGACTTTTTTTTTCCTGGCAGCAGGGTGGAGGGTAGAGGCGGTGTCTTGCTATTGTTAGCCTGCACTGATTTCAGTAAATAAAAGGAATGTAAGTCTGCCTTTGTTTGAAGTTTCAGGATGTTGCAGCTATGAGAAATATGAAAATTAATCTATGTGGTACTGTGTAGGAATGTTGGGACCTGAATTGTTTGTACTGAAAATCTGGACAAATTTAAATTTTCTTTTCTATGTGTTGTCTTAAATCCTCTGATAATATTTTTCTTATACTTTTATATTTCTTCTAAAGGTGGAAAGTAAATTTCTGACTAAAAAAAATTTTTTTTTTAATTTCTGAGTTTTTTGACATTCTAGGTAGTAGGAGTCTCTGAATATGTAAGACTGAATGGGTTTGTTAGTTGAAAAACTAAGTTGGAGCTTCACTGGGTTCTTTTGCATCTATAAATCAGTACTATAGGGAGATATTTCTCCCAGCAATCTTATCTGAGGTTATTGATGTTTCTCCCGGCAATCTTGATCCCAGCTTGTGCTTCCTCCAGCCCAGCGTTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGAGGAACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGGCCTGCATATAGGTTTCTCAAGAGGCAGGTCAGGTGGTCTGGTAGTCCCATCTCTTTCAGAATTTTCCACAGTTTCTTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAGCAGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCAGGAAGTTCATGGTTCACGTATTGCTAAAGCCTAGCTTGGAGAATTTTGAGCATTACTTTACTAGCGTGTGAGATGAGTGCAATTGTGCAGTAGTTTGAATATTCTTTGGCATTGCCTTTCTTTGAGATAGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGTAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTTGTACTGATGCTTTCTAAGGCCCACTTGACTTCACATTCCAGGATGTCTGGCTCTAGGTGAGTGATCACACCATCGTGATTATCTGGGTCATGAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCACCTCTTCTTAACATCTTCTGCTTCTGTTAGGTCCATACCATTTCTATCCTTTATTGTGCCCATCGTTGCATGAAGTGTTCCCTTGGTATCTCTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTGTTGTTTTCCTCTATTTCTTTGCATTGATCACTGAGGAAGGCTTTCTTATCTCTCCTCGGTATTCTTTGGAACTCTGCATTCAGATGCTTATATCTTTCCTTTTCTCCTTTGCTTTTTGCTTCTCTTCTTTTCACAGCTATTTGTAAGGCCTCCTCAGACAGCCATTTTGCTTTTTTGCATTTCTTTTCCATGAGGATGGTCTTGATCCCTGTCTCCTGTATAATGTCACGAACCTCCATCTATAGTTCATCAGGCACTCTGTCAGATCTAGTCCCTTAAATCTATTTCTCACTTCCACTGTATAATCATAAGGGATTTGATTTAGATCATACCTGAATGGTATAGTGGTTTTCCCTACTTTCTTCAATTTAAGTCTGAATTTGGCAATAATGAGTTCATGATCTGAGCCACAGTCAGCTCTTGGTCTTGTTTTTGCTGACTGTATAGAGCTTTTCCATCTTTGGCTGCAAAGAATATAATCAGTCTGATTTCAGTGTTGACCATCTGGTGATGTCCATGTGTAGAGTCTTCTCTTGTGTTGTTGGAAGAGGGTTAGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAATGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTTTGGGCTCCAAAATCACTGCAGATGGTGATTGCAGCCAGGAAATTAAAAGATGTTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTAAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTGTGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCACTGAAGAATCGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGGGAGTCCCTTGGACTGCAAGAAGATCCAACCATTCCATCCTAAAAGAGATCAGTCCTGGGTGTTCATTGGAAGAACTGATGCTGAAGCTGAAACTCCAATACTTTGGTCACCTCATACGAAGAGTTGACTCATTGGAAAAGAACCTGATGCTGGGAGAGACTGGGGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGTTGGATGGCATGACCGACTCGATGGACATGAGTTTGGGTAAACTCTGAAGTTGGTGATGGACAGTGAGGCCTGGCACGCTGCAGTTCATGGGGTTGCAAAGAGTCAGACACGACTGAGCATATGGAGATAGTGCCAATAAGGAAAGGAAAAAATAAACTATTGTTACATATATTTATTTATTGTAGTGTTACTGAAAGGAAATGGTTTATGGGCTAAAGGTTAGTTCAAAGGTAATAACTTCCTGGAATTTACTGTAGATGAAAGATGCCAGGATATATTTCTGTGTGAGAGACCACGTTTGACTTCTACACTGAACGTGTCCCTCGACTCTGTACCCTTAAGCTTGCCTTTAAGGTGCCGGTATGTTTCTGCCCCTGCCCGAGGGTCTTCTGAAGCGGATGCCTGGGTGTCGATCCACGCACACTGAGGCACGTGTAGCACAGTCTGTGTTCAGTGAAATCATGCTCCTTCCTTCCCTCCTTCTCTGTACCTGACTGCTGCAG
Seq C2 exon
ATGTTGACGAATGCTCGGAAAACAGATGTCACCCCTCGGCCACCTGCTCCAATACCCCTGGCTCCTTCTCCTGCCGCTGCCAACCTGGATATTACGGGGATGGATTTCAGTGCACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021945:ENSBTAT00000029257:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=36.7)
A:
NA
C2:
PF126622=cEGF=PD(13.6=7.3),PF129472=EGF_3=WD(100=82.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development