BtaINT0102000 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007720 | NKG2A
Description
Bos taurus killer cell lectin-like receptor subfamily C, member 1 (KLRC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001168587]
Coordinates
chr5:99974365-99975120:+
Coord C1 exon
chr5:99974365-99974551
Coord A exon
chr5:99974552-99975021
Coord C2 exon
chr5:99975022-99975120
Length
470 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCAGTAGTTACTTTCGGCAGGTT
3' ss Score
3
Exon sequences
Seq C1 exon
ATGAATAACCAAGGAGTAATCTATGCAGAACTGAAGGGAGTCAAGAACTCAAAGAGACAGCGAATAAAACCTAAGGGCTCTAAAGGTTCCATTTCAATAGCTCCACAGGAATTAACATATGCTGAATTAAATCTTCAAAATGCTTCTCAGAATCTTCAAGGGAATGAGGAGAACTACCACTTCAAAG
Seq A exon
GTAAAACATTACCAGTCACTAGGTGGAACTGTTCCAGGATATGCAGTTGGGGTGCAAAAGTGTGGAGAAGGAGTAAGGGATAAGTCACATATTTTTCATTTTGAGGAAGAGAGCTTAAAATTGGGTATGGTATTTAATGTGAAATCAGAGAACTACTTTCATTCTGGCATTGCTGAAATTTGTAGTCTTTAATCAACAACTAATGCAGCATTATATTTGCTGAAAATGCAATGGTATATTTTGAGAGAATATATATTTCTACATGGTATATTTCTACAGTTGTAGAAATTGAGTTTGGGGTCCAAGTTTATATACATAACTCTCTGTTTACATGGGTTCTAGTGTAGGCTGCTGTCTATGGGGTTGCACAGAGTCGGACACGACTGAAGCAACTTAGCAGCAGCAGCAGTGTTATGTCTACTCTAAACAATTGCTCCCATCACTCCTTTCTCAGTAGTTACTTTCGGCAG
Seq C2 exon
GTTCACCATCACCTCCAGAGAAGCTCATTGCTGGGATCCTCGGAATCATCTGCCTTGTCCTGATGTCCACTGTGGTAACAATGATCGTTATTACTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007720:ENSBTAT00000025182:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083915=Ly49=PU(52.6=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATAACCAAGGAGTAATCTATGC
R:
AGGGAGTAATAACGATCATTGTTACC
Band lengths:
286-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]