HsaINT0088951 @ hg38
Intron Retention
Gene
ENSG00000134545 | KLRC1
Description
killer cell lectin like receptor C1 [Source:HGNC Symbol;Acc:HGNC:6374]
Coordinates
chr12:10450484-10451187:-
Coord C1 exon
chr12:10450970-10451187
Coord A exon
chr12:10450580-10450969
Coord C2 exon
chr12:10450484-10450579
Length
390 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TCCCATTTCTCTCCCTGCAGATT
3' ss Score
13.09
Exon sequences
Seq C1 exon
AGTACAGTCCCTGACATCACACACTGCAGAGATGGATAACCAAGGAGTAATCTACTCAGACCTGAATCTGCCCCCAAACCCAAAGAGGCAGCAACGAAAACCTAAAGGCAATAAAAACTCCATTTTAGCAACTGAACAGGAAATAACCTATGCGGAATTAAACCTTCAAAAAGCTTCTCAGGATTTTCAAGGGAATGACAAAACCTATCACTGCAAAG
Seq A exon
GTAAAGCATTTAAAAGATCCTCAATATAACAGTCTAGGATGTGCAGCTTGGGGTACAGGAATGTGGGGAAAGAGAAGGGAGTGCTCATATATCTTCTATTTGCAAAGATCAGAATTCCAAGTTGAGATATGCTATTTCAATGTAAAGTATGAAGACTGATTGAACTCATTGTTGAAGTTTGTAGTCTTTGTCAAATAATTCATGGAGCATTATTTTTCCTGAAAATTCAATGGTATATTATTCTGAGAAAAAGATTACAATGGGAGATGAGGGTTTGGGGTCCAAGTTTCTCTGTATGATTCCTGTGCATTCAGGTTCTCTTGTCTGTGAATCTTCTAAACGACTGTATCCACCTCTCCTTTCGCACTGTTCCCATTTCTCTCCCTGCAG
Seq C2 exon
ATTTACCATCAGCTCCAGAGAAGCTCATTGTTGGGATCCTGGGAATTATCTGTCTTATCTTAATGGCCTCTGTGGTAACGATAGTTGTTATTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134545:ENST00000544822:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCCCTGACATCACACAC
R:
AGGGAATAACAACTATCGTTACCACA
Band lengths:
311-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development