BtaINT0102004 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038843 | NKG2C
Description
Bos taurus NKG2C protein (NKG2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001098163]
Coordinates
chr5:99988121-99988796:+
Coord C1 exon
chr5:99988121-99988190
Coord A exon
chr5:99988191-99988697
Coord C2 exon
chr5:99988698-99988796
Length
507 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTCCTTTTCTCTCCCTGCAGGCT
3' ss Score
13.3
Exon sequences
Seq C1 exon
ATGAACAATCAAACGCAAAACTACCCAGAACAAAATCTGGCTAAGGACTCCAGGAAACAGCAAGTTAGAG
Seq A exon
GTAAGAGCACGCAAAGTTCCATTTCAGTCATTGAGCAGGAGAAAACCTACATGGAATTAAAATTTCAAAATGCTTCTCACTATCCTCAATGGAATGACAGGAGCTACCAGTGCAAGTGTGAGAATTTAATAGCTCACATACTTTTTATTTATGAGGATCAGAGCTTGAATTTGAAATACAGTACTCTAGTGTGAGCTTCCTGGTGGCTTCGTGATAAAGAATCCACCTGCCAATGCAGGAGACGTGGGTTGGATCCCTGGCAAATCCCATGGACAGAGAAGCCTATCTATTCCAGGACTGTTGTAATTTATAGTCTTTGATATACAACTTGTGAAGTGTTATATTTGCTGAAAATGTATATATTCTGAGAGGAGGATTACAATGTTTCATATGGATTTGGGGTCCAAGTTGATGTCTATGAATTCTCACGGATGTGGAATCTTTTGTTCTTCTAAAACAACTGTCTCCATTGCTCCTTTCTCAGTGTTTCCTTTTCTCTCCCTGCAG
Seq C2 exon
GCTTACCATCACCTCAAGAGGAGATTGTTGCTGTGATCCTGGGAATCATCTGTTTTGTCTTGACGTATACTCTAGTGAGAGTGATAACTTTTATTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038843:ENSBTAT00000055860:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]