HsaINT0088957 @ hg19
Intron Retention
Gene
ENSG00000205809 | KLRC2
Description
killer cell lectin-like receptor subfamily C, member 2 [Source:HGNC Symbol;Acc:6375]
Coordinates
chr12:10587911-10588592:-
Coord C1 exon
chr12:10588399-10588592
Coord A exon
chr12:10588010-10588398
Coord C2 exon
chr12:10587911-10588009
Length
389 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTCTATTTCTCTCCCTGCAGGTT
3' ss Score
12.87
Exon sequences
Seq C1 exon
TGCAGAGATGAATAAACAAAGAGGAACCTTCTCAGAAGTGAGTCTGGCCCAGGACCCAAAGCGGCAGCAAAGGAAACCTAAAGGCAATAAAAGCTCCATTTCAGGAACCGAACAGGAAATATTCCAAGTAGAATTAAATCTTCAAAATCCTTCCCTGAATCATCAAGGGATTGATAAAATATATGACTGCCAAG
Seq A exon
GTAAAACATTAAATATATCTTCAATATTATTGTTCTAGGATGTGCAGTTGAATGCAGAAGGGTGAGGAAAGATTAGGGAATATTTTGCACTTGTGAGAATCGGAGTTCATAATTGGGATCTAAAATTCTAATATGAAATCAGAAGACTAATTTTATTCGGGCATTGTTCAACTGTAATCTGCGGTCCACTCATGGAACATTATATTTACTGAAAATGAAATGGTATATTCTGAGAGAAAGATTACTAGAGTAGATGTAGATTTAGAGGCCAGAGTTTATCATTATGTTTCCCTGTGCATGTGGGTTCTCTAGTATGTAATTCTCTAGTATGTAATCCTAATCAACTCTCTATCTCCCCTCTCTCAGTGCCTCTATTTCTCTCCCTGCAG
Seq C2 exon
GTTTACTGCCACCTCCAGAGAAGCTCACTGCCGAGGTCCTAGGAATCATTTGCATTGTCCTGATGGCCACTGTGTTAAAAACAATAGTTCTTATTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205809-KLRC2:NM_002260:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGATGAATAAACAAAGAGGA
R:
TTGTTTTTAACACAGTGGCCATCA
Band lengths:
278-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)