BtaINT0102822 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010362 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:27323356-27326680:-
Coord C1 exon
chr2:27326592-27326680
Coord A exon
chr2:27323482-27326591
Coord C2 exon
chr2:27323356-27323481
Length
3110 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
GTCAAATGCTGTTTCCACAGAAT
3' ss Score
6.79
Exon sequences
Seq C1 exon
GCTTGGAACGAATGCTGAGAGCCTACTCCAGCCACTCCTCCTTCTCAGACTCAGAGAGCGAAAAAAGCACAGCAGCCTTAATGGACGAG
Seq A exon
GTAAATATTTGCAGAGCGCAGTTTGGTAGATTTAATGATGAAGGAGCTATTTGGGGAACGCCTGTGTTCTGGCCCAATTGACCTCTGTTTGCCTTTCCTTTCTCATGACACAGAAGTCTAGTCAGAGCTTGTATGGTCAGCTCCTTGACAAGTGGTTTGAGGAATCTGGAAAAATCCAGCTACTTAGAGATGTTTGCTTTAGTGTCCTCCCAGGGGGGGAAAAATGTGCCTAAAATAAAAACCTTCCCCCTGCCCCCAGCATAGAATCACTCAGTCAAGGTCTAAAAATCATGTGTACGCTACCTCAGTTAACAGATGTGACTGAAAACAAATGCAGGGTCTGCTTTCAGAGAGGCCTGCACCCGGATCTAGCTCGGCCAGTTACAGGCCGAAACCTGGGACAGGTTCCGTTTTCTCATCTTGGAAGTGGGGATGTTGGTACTTAGCTCAAAGGGGTTTTGTGAGGTTGAAGCAGTATTTAGAAAATGCTAGCATAGTGCACAGCTGCTGCTGCTGCTAAGTCGCGTCAGTCGTGTCTGACTGTGCGACCCCACAGACGGCAGCCCAATAGGCTCCTCTGTCCCTGGGATGCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTGCCTTCTCCATAGTGCACAGAGGAGGGCTGAAATCCTGGTAATTATTATAGAGATGCTGTTTTCCATTTATCCCTGAGCCAACATCAGGGTCTTCTGAGAATAATAGGGGAAAGGAGAGATGTGGATGTACAGAAGGAAGATGGCTGTTAAGGGTGTGAGAGCTTCCAGGGAAACAAGGAAAAAAACTTCAGAGGCCAAGGTCATTTTGAGGGGAGAGGAGGTGCCGTCAGTGGAGGTAGGGGGAGGTAATTTTTGCCGAAAGGCTGTACTGCAGCAGCACCCAGACATCTGCTGCAATTGATGGGCAGTGCGACCTCTTCAGAGGAACCCACATTATAAAAAAGTTAGCAAAGGCCCATGAATTTTATACAGGAATAAAAACAAACAAATACTGTGACCTATGTGTGGCAAGGTACACAATTTCTGTTATGATTGGAGAGAAAGCTGATTGGGGTTAATTTGAGAAGAATTCAGGAAGAGATTAAACTTTTAGCAATGTTTTGAAGGATCCAGGAAGCTGGGCCAGTTTTCCTTTCCTTGCACGTAGCCTATCTAACACTCTTGTAATAAGTATGTACCTAATAAATTCTGTTCGAACAACAATTTCAGTAGTCCTTTGGTAAAAATAGACAGATGCAGCCAGGTATTGTTTATCTGTTTTTTAGCAGCAGCTTCCTTTAGTGGAGGTGCTCTTTAAGGAATAAACCTGACACTTGGTGAAGACAGGCCTGAATTCTGTTCACTTGGGAACAGAGGTCTAATATCCTTGCAGTGACATATGGCTACAATTTTTATAAAATTATAAAACAGACTGAAAGACATTTTCTGTGACAACATAAAATGTTTGGTTAACTAATTCAGTGTAAATGATATTTACCAAAAGGAAATCATATGAAGCATTTTATCATGGCATTAATTTATAAGTTTTATTTCTTTGGGTTCTTGCATAGCATTTTGTCATCGATATAGAATTTGTATTAGGATCTTCCGGGTACCCAACTGGCCTGATTCACACAGTGGAGGATGCAAGATGGGAGATGATCTAACCCCTGAATTTATGGTGTTTAGGATCTAGCAATGATGCAAAAAGGGTCTTCAAATAGTGGATGCCAAATATCTGTGTCAGAGATTATACACCCCCACATCTGGTGGAGGGAAACTATTAACAGTAATGGTGATAGATTGATTTTGTCTTAGGCAGGGGAGGTTTCTTGCAGGGGAATCTCTATTTCCTATTTCATTGGCTCTTGGTCCAGTGCCATATTTGAAACAAGAATGTTGGCAAGCCATACTCTGAGAAACTGTTGCAGAAACTGGAAGTGTTTGGGGGCAGATATTGTCTTCGGTTACCAGAAGGAACACACCACAGAACAGAGAGACTTGCTGTTGATGTTCTCAAGTGCAGACTGGATCTAAGGCTAGAAGCTATGGAGGAGCTTTTGATTGCATCTTAGGTGAGCCTGCCCACTGTGCAGTGAATTGTTCCAAGGACTAGAGCTCTTCCCCATCGATTGGAGGTGTTTGGTCCATGGCTGTGATTCCCTGACAGTGATGTTAGGCTTATGAATCCCAGGCTGCAGACTTCCCTGGCAGTCCAGTGGTTAAGACACCTCGCTTCCTCTGCAGGTGGCACAGGTTTGATCCTTGGTCGGGGAATTAAGATCCTGCATTCTGAGTGGCACAGCCAAAAAGTAGAAAGAAAAAAAAAGGAATCCCCAGGCTGGAGATGTGGAGGAGGGAGAGGCAATGGTGAGGAGGATGTTGAATAGCAGACTCTTTCCAGTGTTTAGATTCTGTGCTTTGATTTACCTTGACTGAACACAACTTGACAGAGAAGTCACTATAAAGTTTCTAGCTCAAGGTCAAATTGAAAACAGGAGACTAATAGCTTTAGTTTCACTCTTTATTTTTATATTCAAATAGCCCAGAATATTGTTTCTAGTTTTCAGAAGTGTTGCTGCAAACTTTCCAGGTAATATAAGACCTCACCTCTTCAAGAAATAATAACACCACCAACAAAAACCCTGCCACACATCATTTTAGTTTGCTTCTGTTGACAATAGTCAATTCTCTTCTTTATGTTAAGTGCCCATGGCTCCATTGCCTTTCTTCAAAGCCCCCTGAAAGCCTGCCTTCTGCAATCAGCACTTACTAGTCTCTTTTCCCCATTCCTCAGCAGAAAGTTAACTAAAGCTCGTTGTCACAAAATGCTGAGTAATGTATCTATCAAGCTTTCTGGTTTACCTTATTTACAAGGGTCCAGAATAAGACGCACTCAACAACTAAGGCTTTCTTTAGACTTCTTAAAGGGTCCATTGTTTTTCTCTCTCCAGCATTTTATGCAAATGAATTGCACATGAGTTGAATGTGTACTTTTCTGAACGTCTTTGTCATTTTGGAAGTTATCCTGATGTCCCTTTATCCACCCACAATGGTTGTGCCTCCTCTAGAAATTTAGTCATATGGTCAAATGCTGTTTCCACAG
Seq C2 exon
AATAGCTTGAAACTAGACCTTCTGCAAGCAAACTCCTATAAACTGTCATCTGTGTTAGCAGAACTTGAGCAAAGACCTCAACCCAACCATCCCTGTAGTAACTCCATCTTCAAGTGGAAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010362:ENSBTAT00000013682:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.452
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]