HsaINT0114794 @ hg19
Intron Retention
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169713200-169716147:+
Coord C1 exon
chr2:169713200-169713288
Coord A exon
chr2:169713289-169716021
Coord C2 exon
chr2:169716022-169716147
Length
2733 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
GCCAAATGATGTATCCACAGAAC
3' ss Score
5.53
Exon sequences
Seq C1 exon
GCCTGGAACGAATGCTTAAAACGTACTCCAGCACCTCCTCCTTCTCTGATGCAAAGAGCCAGAAAGACACAGCAGCGTTAATGGATGAG
Seq A exon
GTAAATGTTTGCCGAGTGCATTTCCTAGATGTAGTGATGAAAAGGGTTATTTTTAGAATACTTGTTTCTGGTCCACTTGGCCTTGTTTGCCTTTCCTTTCTCATGACATAGAACAATCTAGTGGGGGAGCTTATAGGGTCAGCTTCATAAGTCATTTGAGGGATCTGGAAAAATACAACTACCTAGAAATGTTTGCTTTGGTGTCCTAGGAAAAGAATTGTGTCTAAAATAGTATTCTCCAAACAGAGTCGTTCTTTAAGGGCCTAGAAACCATGTGCACTTTAACCCAGTTAAGAAAAGCGACAGGAAACAAAGGATCTGCATTCAGAAAGGCCTGTATTTAGATTTAGCTCTGCTGTTTACAGGGACCTGGGTCAACTTTAGTTTTCTCATCCGCAAAATGGGGATATTGGTACTTTACCTCATGGGGCTTTTGTGAGGGTGAAATATTATTTAGTAAATACCAGCACAATGCTCACAGGAGGAGCTCAAAAACTAGTAATTTTTATTAAGGTGGTATTTTCCATTCATCCCTCTGCTGATCTCAGGGTTATCGGAGAATAACAGGGGAAAGGAAAGACGTGGTTGCAGAGGGAATAGGGCAGTCTGGTGTGTGAGGCAAAATCTGGGGAAACCAGGAGCAACTTTGAGGGCAAAGTTCTTTAAGGGTGGGAATTGGGGTGGGGAGATGGTAGAAGAGGCAGGGAGGTGGGCCTCCTGGCCTTTGTGCTGAGTGTGTGAACTCTAGCCCCATAGACATTCGTGGGGATTGATGGACATTTTGGCCACTTCAGAGGAAGGGAAAGGGATAGTTAACAAAAAGCTGATGAATTTTACACAGGAATAAAAATGAACAGATATATAGCACCAGTGTGCAACATATGGGTTTCTGCTGTGATTAGAGATCATGAGTGGACTGGGGTTAATCTGAGAATCATTTAAGGAGATAAATTTTTTAGCAATGTTTTGAAGGTACAGGAATCTGGGCGTTTTGTTTTTCTTGCTTATAGCCTAACTTTCTTGTGAAGGTAGGTACTTGATAATTGTACCCAGATTGGCAATTTCAATAGTTCTTTGGTGAAAGAAGACAGATGCAGTGAGGTATCGCTGACCTAGTTTTTAGATAGGCTTTCTTGAGTAAGGTGCTGTTGCAGAAACAAGCCTAACACTTCTTGTAAAAGAAAATAGCCTGCATTGTGTGCACTGGGTAACAGAGGTCTAACATACCTGCAATGACCCGTGGCTACAGTTTTTATGAAATTATAAAACAGACTGTAGGACATTTTCTGTGACCGCACAAGCTGTTTAGTTAACTACTGATGCCATTGGGTTATACATCTATTCCTTTGGCTGTCCTTGCACAGAATTTTGTCATTGTCATTACCAGCATACATGTATTAGGATCATCTGGGTCCTCTCACCTGAAGCACACAGTGGAGGACACAAGGAGGGAGAGCATCTGACCTTGGAACTTCCAATGTTTATGATCTGGTGAAGGAGCAACTATGAACCTTTAAGTGAGGAATGCCAAATATCCACATGATTTCATTACGCATGCTCTGCATCTGGGTAGACAGAAACTAGTGATACTGGTAGATTTTGTGTCACCCACGGAAGGTTTCTAGGATGAGGAAACTTTTATTTACATTCTTCCTTATTTCATTATATCTTGGTCCTTGAAGTGCCATGTTTGAATCAAGAATGTTCACAAGCAGTGTCATAAGAAAAATTGTTGAGAAAACTGGAGGCACTTAGATTAAATACTGTCTTTAGAGACCAGAAAGAGGGCCACATAGAAGAAGAACTAGATGTGCTCTATGAGACTATCAAGTGAAGGTCTAATGGTAGAAAGCATGGGGGAGCTTTTAGTTTTGTCTTAGGTAAGCCTGCCCCACAATGCAGTGGATTCCTCCAACGATTAGAGACTTTCTCCATCAATTGGATGTCTTCTGTCCATGGCTGTGACACCCTGGCAGGGATATTAGGGTTGGGAATTCCCATGCTGGAGGTGTGGGGGAGAGAGGGATAATGGTGAGGAGGGGGCTGGATAAGCAAGACCCTTCCAATGCTTAGATTCTGTTATTTAATTCACCCTGGCTGGACCCAGCCTGACAAGGTAATTATAAAGTTTCTAGTTCAAGGTCATATCAAGAACAGACAGAGACTAGGAGTGTATCTTTAGCTTGACTTATTATGTTTATACTCAAATGCCCTAAAATATTGTTCCCAGTTTCCAGAAGTATTCCTGTAAACTTTGTGGGTAATATAAGACCTCACCTTATCAAAGAACAAACAAACCTCACATTCAATTTCATTTGCGTCTATTGATGTTAATTCAATTCTGTTCACAATATTTAGCACTGATGGCTCACCTTCTTCGCAGACCACCAAAAATCTACCTTCTACAATCAACACTTATCCCCTTTCTTGTCCCTCAGCAGAAAATTGAGTAAAACCTCTTCATTGCCATAAAATACTAATATATTACCAAGGTTTCCTGTTCACCCCCAGAGTACAGAATGAGACACACTCAACAACTAAAACCTCCCTCTAAACTGCTTAAAGAGTTTATTCCTCCATTTTTTTTTCCTTCGGCATTTTCTGTGAATATCTGTATGAGTTAAATGCGTACTTTTCTAACCTTTGTTATTTTGAAAGTTATTCTGATATTCCTATCCAGTTGTGCCTCATTTACTAGAAATTTGCTCACATGGCCAAATGATGTATCCACAG
Seq C2 exon
AACAATTTGAAACTAGACCTTTTGGAAGCGAACTCCTACAAACTGTCATCAATGTTAGCAGAACTTGAGCAAAGACCTCAACCCAGCCATCCTTGTAGTAATTCCATCTTCAGGTGGAGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072-NOSTRIN:NM_001171631:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.452
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)