BtaINT0102825 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010362 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:27317638-27321224:-
Coord C1 exon
chr2:27321135-27321224
Coord A exon
chr2:27317853-27321134
Coord C2 exon
chr2:27317638-27317852
Length
3282 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATGTATGTGCGTTTTCACAGGCG
3' ss Score
9.02
Exon sequences
Seq C1 exon
CCTCCGGTGTGACCCAGCTCGGCAATGGTCTTTGCAAGGCCTTATATCCTTTTCAGGCCAGGCAAGATGATGAATTGGACTTGGAAAAAG
Seq A exon
GTAAGAATCATTCTCAAATAGTTGACTTGCCTTTTCACGTGAAATCTTTAACTTGACTATAACCTTTGTCTTAGCTTTTAAAATGAGTACCATGTTAAATGAGTTCAGGTTTATAATCACCCTTCTTAGAAGATAGAAAGATAAGCACACCAGAAAGAAAGCTCATAATAAAAACAGCTGACATCTATGCAGTATTTACCAGGTGCCAGACATTGCTGCAAACACACTGTCCAATTTAATATTCATAAAAACCTTTTGAGGTAGGTATTATTATTTGTGCCTGTTTTATGAGTGAGGAGACTGAGACACAGAAATGTGAAGTGCTTCGGCTAAAGTCACTGGCAGTCGAGGCTCAGGATTTGAACTTGGAAATCAAGTCACGCTGTTAATCACAGTGGTTACTTGGGGTAGAATATCAGTAATGGACAGTTATCAGAAAGGCAGCCCCACCTTTTTCCTTTTTAGAAGCTACACATACTGGAGTGTGATGTCACTTCCTCTCATGGCTTAATCTAAATGCCAGTTCTAGAACCTGGGTCAGAGGACTCCCAGCTTAATATTTCTCCTACTTCTCTCTCAAAAGGGTTTTACAACTAATCAAAGGAATCAGATCCCCTTCTCCATGTCACAGATTTTTGTTTAATATCAGAAGATATTATGTAAGGACAACCTCAGATATGCAGATGATAACACTCTAATGGCAGAAATCAAAGAGGAACTATAGAACCTCTTGATGAGGGTGAAGGAGGAGAGTGAAAAAGCTGGCTTAAAACTCAATATTAAAAAAACTAAGATCACGGCATTCAGTCCCATCACTTTATGGCAAATAGAAGGGGTAAAGGTGGAAGCAGTGACAGATTTCCTCTTCTTGAGCTCTAAAATCACTGCGAATGGTAACTGCAGCCATGAAATTAGAAGACAATTGCTTCTTGACAGGAAAGCTAGACAGTGTGTTAAAAAGCAAAGACATCACTTTTCTGACAGTGTTCCATATAGTCAAGGCTATGGTCTTCCCAGTAATCATGTATGGATATGAGAGCTGGACGATAAAGAAGGCAGAGAACCAAAGAATTGATGCTTTCAAATTGTGGCACTGGAGAAGACTCTTGAGAGTCGCTTGGAGAGCAAGGAGATCAAACCAGTCAATCTTAAAGGAAATCAACCCTGAATACTCTTGGGAAGGACTGATGCTAAAGCTGAAGCTTCAATACTTTGACCACCTGATGCGAACAGCTGACTCTTTGGAAAAGACCCTGATGCTGGGAAAGATTGAAGGCAGAAGGATAAGAGGGTGACAGAGGATGAGATGGTTGGATGGCATCACCAATTCATTGGACATGAACTTAGGCAAACTCCGGGAGATAGTGAGGGTCAGAGAAGCCTGGCATGCTGCCATCCATATAGGGTCACAAAGAGTCAGACACAACTTGGTGACTGAACAACAACAAGGGGTTGTGAAAACCTCAAGATTATTAAAAGAGAAAAGGTTACCACCTCAACTTTCTTTTTATGTCCAGTTAGCAACCATGTTCGAATGTTAAGCTAAGGCAGAGATCTGGAGATGAAAATGTTAGTGAGAAAGAATTGTGTCATAGGAGAAAATTTATATTCCATGACCAGGACACAGCACCCAGAAGCAAAAGAAGGTCAAAATGGATTTAACAGTTAAACAGCAGGGACACCACTACATATTTGCTATTAGTTCATGGGCACTTCCTTTTCAGTTTGCCAGTCAGAGTTCTCCACGCAGTTACTTTTCCTTGTAGCTCAGAAATAAGTAAAGATAAGAAAAAAGGAAATAGAAAGTAGACCCCACTCCTGCTTTCATCTGAAATCAATGTTGCCTTTAATTTAAAAGTTTTAGGTGTTATAGAAGTCACTTTGTTATTCATCACGCCATCCTAAGACTACTTGTATCAGTAAGTGAGTAAATGAAATGCAGTAGTCCCACTTTCCATATGAGTTAAAGCACATATCCCAGATGCCACCTAGAACCCAGGATCCTGAGTTTGAGTTACATAGTTAACACCTTAAATTGATCATCTTGTTTGTCTTCGGTTCTCTGTTGGTTGCAAAGCCTACTTATACATTATATCCCACGTGGGTTCTTTAAATGGAATGACATGTTGGCGTCTTAGGGAAGCTGAAGATAAAATTTTAAATTATTTGTTTGTTTTTTTTACATTTTTACTTTATGACCATACCATGAGGCACGTAGGATCTTTGTTCCCCAACAAGGGATCAAACCCGCACCTCTTATATTGGAACCGTGGAGTCTTAATTACTGGATGGCCAGGGTAGTCCATAAATTATGTCTGAATTCCAATAGTGGACTGTGTCAATCTATTGACCTGAGAGAACACATTAGACAGAGTTTCTAGACTGAGGATGGTCTCTTGCAAGAAAAAATAGTGATGTAACTAAGGAAAGATAGAAGGGGGGTCGACAGTCTCCTTTGCCTTGGAAAGAAAATTACTGGGGAGAAAAGTGAAAGAAAAAAAAAACTGAAAATGACTTTGTGATGATGCTAAAGATCAAGTAGCTCTTGGATCCTGAAGAAAGGGGATGTTTCCACTTTGATGTACAGGAAGCAGCCAGAGAGAAAGGACTCTCTCACAAGATGGGGACTAGTGTTTTTATCTTGTTTTTTAATAGAGAATTAGAGAAGAGCCATGTGTTTCCTAGGAATTCCATTTACTTCAATCATTGCTTTAAAGGAGTAATGTCTTCAAATTGATATTTTATTCAAATTATCTCAATTGTTGCACAAGGGGTTATATTATTGTGCAAAGCTGTAGGTTGGAACTTCGGGCTATAAAGCTGGCACATACAGTGGAGAGAAGCTGCTTTGATCTAAAGAAAATCCTGGTAGCCAAGACATACTCTTAATAGCATACCAAACTATGGTGCCCACCAACATGAGGAACCCTTAAAGCACAGACACCAAGGAAGAGTTTGGTGACAAACCATGAGTTCTATCCAAAGGGAACCAGGCAGCCCAAGGACATAGGATCCAAAGTGATTTTGTTTCTAATCAAACTACTTTATGGCACAACTCAGTTGTCCATTACCTAACTTTTTAATATTCTCTGCATTCTGCCTGCTTTGTGCAGAGGTGGTCAATAAGTTTTGCTTCATCTGAATCACCTGCAGAAAAGTGATGCTACCAAGTAACTCCTTGAAAGCAGAATCTCCTTAAAAACTATCTTAACTGATCAAACTCGGGAAGGTATTAATCGCAGGAACTCACTTGTCTAACTAAATGTATGTGCGTTTTCACAG
Seq C2 exon
GCGACATCGTGACGATACACAAGAAGAAAGATGAAGGATGGTGGTTTGGCTCTTTAAAGGGAAAAAAGGGTCATTTTCCTGCTGCTTATGTGGAGGAGCTTCCTTTAAATGCCGGGGACACAGCTTCACAAGCATGAGCGAAATTCTGAAGGCATCATCTTACACACTATTAATTACACAATGTGATGCAAATAAAGGGAAATGCTGTCGTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010362:ENSBTAT00000013682:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.178
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(34.7=54.8)
A:
NA
C2:
PF146041=SH3_9=PD(63.3=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]