RnoINT0102193 @ rn6
Intron Retention
Gene
ENSRNOG00000006611 | Nostrin
Description
nitric oxide synthase trafficking [Source:RGD Symbol;Acc:727920]
Coordinates
chr3:55430295-55433843:+
Coord C1 exon
chr3:55430295-55430384
Coord A exon
chr3:55430385-55433580
Coord C2 exon
chr3:55433581-55433843
Length
3196 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCAGTGTGGGTCCTCACAGGAG
3' ss Score
5.22
Exon sequences
Seq C1 exon
GCTCTAGTGTGTCCCAAGGCAACAACCAACTTTGCAAAGCCTTATACACCTTCCAAGCCAGGCAAGATGATGAGTTAAACTTGGAAAAAG
Seq A exon
GTAAGATGCGTTCTCCAATCTTTTAATTTCTTTTTCACGTTGCGACCCCTCCTGAGAATAAGCTCCTGTCTTACCAGGACAGTGGTAAGTTGTTGCTGGCTGAGGTTTACAGTCAGAGCACAGAGATAAATAGGGAGCCTGAAACTAAGGCTCATCTAATGACAGCTAATGGTCATCTCATGTTTCTATGTGACAGGCACTGTTGCAAGCGTCTCATTCGATTATTAGTCACAGAACCATAAGGCAGACAGTATTTATTCCTGTGTTATAGCCGAGAAGAATAAAACACAGAAACCTTAAGTACTTTGACTAAAATCATGAGCAGGGGCAGAGCACGGTTTGAACCTAGAACCCAGTAATGCCCTGGACCACAGCACTGCACTGGGGCAGAATGCCACTAATGGGAATTCATTGGAGAAAGAGCCCTATATTTTTTTTTTTTCAGATGGCAGAGTTGCAGAAAAGCAAAGTGATGTCTTCCTTAGTATGACAGAAAGTTCTAGAATCTGAGTCCATTGATTAGTGTTTGTCTCTGATATCTCAGAAAAGAACTGAGAGTCAGTCTAAGGGATCAGATCCCTCTGTGTCAGACGTATTTCCCAGGGAAGTGTTTTCTGATATTTTCTATAAACTAATATTCTTAAGTAAGATATCCAGCCTCTGCTTTCTTCAAGTATCTCTAGTTGCATGTCCAAGCTAAGGCACAGGGACCTATAAATGTGCCCATGGAAAAGAATTGTGCCATAAGAGAAAGCTTATAAGCCATGACCAGGATCTAGCCATCCACTTGACTCTGCCTCCAAAGTACTGGGATTGAAGGCGAGCGCCACCCCTCCCGGACTCATTCCGTTTCTGTGTGCCAACGGTACTGGTGGTATAATTCCCAATCATTTGTTTGGATTTGTTTAAATTTCATCAGACAACCTACTGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACGAACACAAAGTCAGAATGAGCTCACATGAGAAGACATAGCAGACCATGGCTGAGAAGAGAAGCAACCATTTCCTGTGCCCTCAGAATGAAGCTTAAGCAGAAAAAGAGTGAGCAAAAGCCGAACCTGACAATAGTGATGAACACAAGCAGATGTTGGGCCCTGGAGTGGGTGTTTCTACTTGGATGGATGAGAGGCAGCTTGTTAGTCAGTCTTTTAATGCTGTGAGACAAACCACCCGAGAAAAAACAGCTTAAGAAAAGAAACGGTTATTCTGGCTCCTGGCTTCCCAAGTCTCAGTTCGTTCAGCTGTTCAGGTCTGTGGAGAGGCAGAACATTTTCTAGATGAAGGTTGTAACAATGGAAATAAGCTGCTCAATCCTTGCTAGCCAGCAAGCCTGGGGTAGGAAGGAGAGGGGTTAGGGACAAATGACCACCTTCAAGAGCAAGCCTTTCAATGACTTCCTGCAAACGGATCTTTCAATAGGCCATCGATAGGAATGCATTGATGACATCAGCACCCTCATTCTCCCATCACCTCTTAACAGCACAACCCTCTGTAGTCTAAGCCTTCAACTCTAAGCCTTCAACACACAGGCCTTTAAGGGGACACTGTTACAAACAGTAACATGGCCAGAGAAAAAGAATTCTTTCAAGCCCGAGGTTTAACCAAAGTATTGAAAGTATGCTGGGCCAGCTCTCAAGCTTACAGTTTCTAACATCACAGTAACCCACTCCTCCTTCTCATTTTACTTTTTACTCTCTGTGAATTTCACATCATGCACCCCAATCCCATTCCTCTCCCTGTCCCTTCGAACCCTCCCTCCACCCTTGCAACCTCCCCATGGAAAGAAAAAAAAAAATCTAGTGGTAGAAGCTGTAGTGTGTCACAGTGTATCCCAGTGTGCCCTTTTGTCCACACTACTTGTAAATGTTCATTGGTCTTCTGCTATACTATCAATACTGGATCCTCACAAGGACTCCTCTTTGATATCCTGTTGTTGCCCTGTGTCATGGAGATCCTTGTAGCTTTGGATCTGCAGGACCGGCCCCTTTATGAGCTCCCGCAGTTCACAGATGGGGTAGATGCTGGGGTCGGCCAACTCAAAGCCCTGGAGCTGGGTGTGGGTGGAAGCTGAGTCAGACCACCAGGGTGAGCTCTCCAGCACTGCCCTGGCTAGGCCAGCTCACCCAATGCTGCAGCCAGCAAGGGCACAGCCAGCTGTCCTGCTCTCATACCCTTGAGGCCTGCTCATCAACAGCAGTCCTGCCCAGGCCCTCGCCCACTCTCCTGAGTGTTCAGCCAGTGAGGGGTGGGGAGGGGATCTCACCCACACCACCACAGAGCAGGAAGACAAGTTTGGGGCCAGCTCTCCCATGCTCACAAACTCAGGCCTGGCTTACTCTGCCCCTGCAGCCAATGTCAGCTCTACTGTGCTACTCAGGTGAGGTGCAGGGCCAGCTCCCCCATTCTCACAGGTCTGGGGTCAGCTCTCCTAGGGGCAAAGGGGCATAAAGGGCATAGGAAATTAGGTAAGAACTGTATTAGAAATTCGGCTTTCATTATGTCCTTAAAATTATCTCCAAATTGATATTTTATTAAAGTTATCTAAATTAATGAATGGAGGAGGCTATGGGAAACTGCCGAAAGTTCAAAACTGAGTGCAGATGTGACACAGGGAGTTATCAAATTTTTAAGAAAAACTATTAGGACGGGCTGGGGATTCAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAGAACCAAAAAAAAAAGAAAAACTATTAGGAGAGACATCTAATAAACTATTCTAAACCATCATGGCCACCATTATGCCCCTTAAGATATGGACAGCAAGGAAGAGCTTGCTGACAACCTATCCACTGTAGAGCGAGTCAGCCATAAAAAGTCTATCAGGATTCTGTTTCTATGCACACTCTTAGCACAGCACAGTAGTTCGTCATTTCCCTCTTTCTAGCAGTCTCTGTATTGTGGCTGTTTCTTGCAAAGTGCTCAATAAAACTTTGCTTCACCTGACTCAAGCGCAGAACGCGATGTTACCAAGTAGTTCCCCAGATACAGACTGTTCTTAAAGATTCTTACCAACCCTTACCTGGCATGTGTTCACGCTACACAGAACCATCTGTCTAACTCAGTGTGGGTCCTCACAG
Seq C2 exon
GAGACATCGTGACCATACATGAGAAGAAAGAAGAAGGATGGTGGTTCGGCTCTTTAAATGGGAAGAAGGGCCATTTCCCTGCTGCCTATGTGGAGGAGCTGCCTCCAAAGGCTGGACAGGCATAAAACAAGAATGGACGCACCAGTGGCCTTGCACAATCTGTAAACAATGTGGTGTTAAAAAAAAAAAAAACTCTGCACTTCACAGTACGTGGAGTTATTAACTTCAAACAGAGTCAAATAAAAGACAGTTGAATAAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006611:ENSRNOT00000067161:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.439
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(34.7=54.8)
A:
NA
C2:
PF146041=SH3_9=PD(63.3=73.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]