BtaINT0102827 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010362 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:27353403-27356979:-
Coord C1 exon
chr2:27356896-27356979
Coord A exon
chr2:27353466-27356895
Coord C2 exon
chr2:27353403-27353465
Length
3430 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TCCCTTGTTTTTCCCTCCAGCTG
3' ss Score
11.84
Exon sequences
Seq C1 exon
GGCAAATCTGGAGATTAATTATGCCAAAGGACTTCAGAAACTGGCAACCAAGCTAAGCAAAACATTACAGAGCGCAAAGAAAAA
Seq A exon
GTAAGTACATGGAAGAGGTAAGGCAAAAATCACTCTTAAAAATAATTTTTAAAAAGTGACATTGTTGTGGCCACGCATTCCGGAAAACAGACTCACTGACAAGGATAGTGCAGATAGTGGAGTGCAGTTTATTACACCAGCAGGCCCAAGGCAGAGTCTCCTCTTAACCAAGAACCCCGACCAGTTTTTGTGAAAACCTTATATACCCTAAGTGTACATGCTCAAACCCACCTCCCCAAAGTCTCTGAAACTAGTCTGAATAAAGGACAAGAAGAATACAATCAAAGTTAACCCGTGATTTGTATGCCTTAAACCCGTGATTCGTATGCCTTAAGCCTCGGTAGCTAACCATGGACAATTATCAATAGGCCTGTGGTCATACCCCAATAAGCATAATAGAATTTCTGATTCTATTCGGTTACACAGATAATTAGGGTATTCTTTTAGGTGATGGAGAGCCTACCTACGAGCCCTGGGGCTCTTCCATGGTGGGGGCGGTTCTGGTTTTCCAGTTGGTTTGTTGTTTCTGTACATACTGGGCACATAGCTCAAAGTCCACAGTCCGGCCCAAGGTGGAGTCCTGCTTTCAAGATGGAGCCTGTTCTGTCTGTTTCCTCCAACGTATGTTCAGTTCCAGCTTCCTTTTATGAAGGTGGCAGGTCCAGAGCATCAAGCCTGGTTTCCAGTTCTTGGGCACTTACTGTGTGCCAGACACTGCGTTAAATGCTTTTCTAGATTTGCTACACTTATTTTAATCCTCACAACAATCTCTGAGAAGTCTTTTTATGATCCCTATTTACACACAAGGACTTAAAGCTTGGAGAGTTTAAGAAACGTGTGACACAGATAATCAATTTCAGGATTGAATTCATCCTGTGTCATTGTGAGGCGTAAGATCATATTCAGAAAAGGCCTTGGTGATGATACTAACTTAGGAAACAGAGTTGTTAAGTCGGTAGGTCTTGAAGTCCTGAAGTGGGTATCCCGCTTTATCTCAATTTTATGACTTTCAACAAATAACCTGGCCTCCCTTAATTTCCTCTTCTGTTATATGGAGTAACAGGACATGCTCCTTTGTGTGTGTGGGGAGGGTGGGTACAGGAGTGCATATTAAATGAGATAATATATGTAAATACATTAACACATCAGGTGCTGAAAAAAATGTTGGTTCACAAGTTTTTTTCAATTCAGTTGAAAATGAAGTCAATTACTTCTCTCGGGGAAGAGAGGAAAGATATTGGTATTCTTATAAAATAGTCCATTAGTGATAATTTGTTACAAAGATCTGACTATTGTTTGCAGATGTCACCCAGTGGCAGTGTCATTGCAAAGACCCCTTCTGATGGTAAAAGAAAGAGGGAAAGAAAAAAATAGAAGCCTTGTGGAACATTCCTACTCCTCCTTAGGCATCATCCTATAACCGCAAATAGTGGCTCTGAAATCGCTCTGACTTTGAGCCTGATTTTTAGGATAGTATTTTAGTAGCCTGGGGCGTTCCTGGTGGCTCAGATGGTAAAGAATCTTCCTGTAATGCAGGAGACCTGGGTTCACTCCCTAGGTCAGGAAGATCCCCTGGATTTGAGAATGGCAACCCACTCCAGTATCTTGCCTGGAGAAGTCCATAGACAGAGGAGCCTGGTAGGTTGCAGTCCATGGAGTCACAAACAGCTGGACATGACTGAGTGACTAACAGTTTCAGCCTGCAGAGGAACTAGTAGAGCACCCTGGTTGGATATAAATAGATGTTTTCAGATTGCCCAGGTTTTAATTCTGGCTCTATCACCTATCATCTGGGTGAATTAGGAATTTCGTGCTCAGTCCCTAAGTTGAGTCTGACTCTTTGCGACCCTGTGGACTGTAGCCTGCCAGGCTCCTCTGTCCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTTCTCGTCCAGGGGATCTTCCCCACCCAGTGGGGAACCTGAGTCTCTTGCAGTGGCAGGTGGATTCTTTACCACTGTGCCACCTGAAAAGTCCATATCTTCCCTCCCAGTGTGTAGTGTATTTAAGATGGAAATAAAACCTACCTCATATAATTTCTGTGAGGTACTTGTATAATAACCCAAATTATTTCTTTTCTCAAAGACCAATTAAGTGAGGGTCAGAGAAACTGAGTTCTTTCAAGGTCAAGCAGGGCACAAAGTGGGGCTTGTAGATTCAGACACAGACCCTCTGAGGTCAATGCCTACACGTTCCTGCTCTGCTGCCCTGCTCCTCCTAGGGGCAAAAGTCAGATTCTCTTCCTGAAAGTGTACTAAGATTTCTTGCAAAACAAACAGACCAAAAAAAAAAAAAAACCCAAAAAACTCAACTGAGATTTAATTTACATGCAATAATAAGCACACATTTTAAGTATATATTTTGATCAATTTTGTTATAAGTATACACCATGCAGCCTCTACCAAAATCAAAATGTACCTATTTTTATCACACTAAAAGATGCCTTGTACCTGTTTACAGTCCTTTCCCCAAGACAGTCCCAAGGTAACATTGATTTGCTTTTTTTTCAATCTAGATTATTTTGTCTTTTCTGGACTTTCCTATAATTGGGAGCATACAGTAGGTCCTCTCTTATGCCTGGTTTTGTGCCAGGCTTTGGATGCATAGAAACTCTGACATCCTTTGATCTAGTTCTCCCATTCTGCGGCTGCCAGGTGCAGCCCAAGTCATTTGGAGGCAAAATCTCTGTGCCATCTTGCTCTCAGTAGGGGCACCGATCTGTCCTCTCCTTTCCATCAAAGCCTACACTGGCTGTATCCCTTCGGTTTATCAATACAACGGGCTTGCTATTTGACGGCCAACTATACATAGGAGAAAAATAGCTTCATATTTCTTGGTTCTCTCTTTGTGCTGCTTGGGTCAGGGCAGAGCAAGCCTTTTGTTAAATTGAGATACTGTTCACAAGACTATGGAGTATCTGAGCTGTGTTCCTAAAGGCCAGCAGGGAATCTGAACTATACCCCAACCGCAAGAGGAGCACACAGGGAATGAATGAGCAGGGTTCTGAAGTCATCCATCACTTAACTTCTCTGAGCCTCCGGTGGTTCATCTGTAAAATGAAGAGCCTGAAAAGACTGTCTTTAAGGGTCTTCTACCTCTGGCATGCTCTCTCTCTCACCTGTTCTAAATGCCTTCTTATCCTTGCTTACTTTATTCCCCTAATACTTTACAGACATGAAATGGAAATTGGAATGAAAATGACTGGGAAAAAAGCAGATCATGTAATGATTACAGTGCAAATAAATATGTTGGCTTTAATCCCATGGAGAAATTGAAACAGTATTAGGGATATGAGTGCAATTGCCAAATGCAGGAATCAGATGGGATGCTTTATTTCTGGGACTCCTGGGAAAATGACACCCACACTTGTCCTCCCTTGTTTTTCCCTCCAG
Seq C2 exon
CTGTCTTGTCAGTGCCTGGGCCTGGGTCTCAGAGGGCATGAAGTCTGCAGGGGACCTGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010362:ENSBTAT00000013682:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(32.2=100)
A:
NA
C2:
PF0061118=FCH=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]