HsaINT0114802 @ hg38
Intron Retention
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:168824634-168828220:+
Coord C1 exon
chr2:168824634-168824717
Coord A exon
chr2:168824718-168828157
Coord C2 exon
chr2:168828158-168828220
Length
3440 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CCACTTTTTTTTGCCTTTAGTTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
GGCAAACCTGGAAATTAGCTATGCCAAAGGACTTCAGAAACTGGCAAGCAAGCTGAGCAAAGCATTACAGAACACGAGAAAAAG
Seq A exon
GTAAGTATTGTGGCAGAGGTAAGGCAAAATCAACCCTTTTTTTATTTGTTTTTTGTTTGTTTGTTTGTTTGTTTTTTGAGACAGGGTCTTGCTCTGTTACCTGGGTTAGAGTGCAGTGGCACAATCACAGCTCACTGCACCCTCAATCCCCCAGGCTCAGGTGATCCTCCCACCCAGCCTCCCATATAGAGTAGCTGGGACCATGCCCTAAATTTGTTTTGTGTTGGGACAGGGTCTTACTATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTAATCCTCCTGCCTTGGCCTTCCAAAGTTCTGGGATTACATGTGTGAGCCACCACACCCAGCAAAATCATTCTTAAAAATAGTAAAAAGTGACATGTTCCATTCCAGCTTCCTCTTCTAAACATGGCAAGTACATAACATCAAGCATGGCTTCCAGTTCTTGGGCACTTACTGTGTGCATGCACTGTGTTAATGCTTTACTGATACTCCCATTTAATCCTCATAAGAACCCTTGAGAGGTCTTGTTATCCCTGTTTACAGATAAGGACTTGAGACAGAAAGTTCAAGATACTTCCCCCAATCACCCAGATCATGAGTTGCATAGCTGGATTCTTCCTCAGTGTTTATGACTCCTAAGGCCACATTCATAATAGGCCTTGGTAATGATATTTAACTTGGGAAGTGGTGTTGTTAAAGTCAGGTTGTCTTGGAGTCAGGAAGTGTAAATCCTATATTTTCTCTACTCTATGGCTTTTGACAAGTAACCTGGCCTCTGTGTGCCTTTATTTCTTCCTCTGTTGGACAGAGTAATAATATGTGCTCTATTGTGTGTGTGTGGGCATATTAAATGAGATCATGTGTGTGGAGAGCTTAGCACATTAGGTACTGAAAGGTATTGGTTCACATTCTTTTCAATATATTGCAGCACTAAGAATGAAGTAGATTCCTTTATTAGGGGGAGAGAAGAAAGATATTGGTATACCAAAGATAGTTCATTCGTGGTAATTTGCTACAAAGATTCTTGACTAATGCATGCAGACGTGCCCTTGAACTGACAGTGCCATTGTAGAGGTCTCTTTTGATGATGAAAGAGATAAGAAGGGGAAAGGAAAAAAAGAAGGCTTCTGGAGCTCAAATTTCCACTCTTCTTTAGGCATCAGCCATAATAACAAATGGTGGCTTTGAAAGTGCTCTTTTAGCTTTATTTTTATTTTTAGGACAGTATTTTAGTAGACTACAGTGAAGCCAGTATAGCACAGTGGTTGAGTATAGATACACTGCCCAGGTTTAAATTCTAACTCTACCACTTAACAGGTGAGTGACCTAGGAAAATTTATCTTACCTCTCAAGATCTCTTTAAAGTAAAAGTAAAGCCTATCTCTTATGGTTGCTGTGAGAATTAAATACGGTAATATAAGACGTGTGCTTAGCAGAGTACCTGGCAGGGAACGAAAGCTCTGTGAATGTCCATTACGTTTTTGATTCGAATTGCCTCCTAAGGAATGAGGGGTGTAGGGGTGTGTGTATTGTGTTACAGCTCTGTCATCCAGCAGAATACTACCAAAGAGTTGGCAGGTCCAGAATGTTAGGCCAACTGGGATTAGTACAGTATTTAACAGTAAACATTAGAGAATTTTTATCCATACCGAAATCTGTGTTAGGTACTACAGATATCCTGTTACTTCATTACTTCTAATTCTTTCTCTCTTTCTTTCTTTCCTTTCTTTCTCTTCCCTCCCTTCCTCCCTTGCTTCCTTCGTTCCTTCTCTTTCCATTTTTACCCTGTCTTTTCACAGGTGTTGACCAAGTTACTTCTACTTTAAAAGATCAGTTAAGTGAGGGCCAGAGATTCTTCCAAGGTCATGCAGAAAACAAAGGGGGAGCATCTCCATTCAGACACAGACTGAGGCCACATGCTTGGTTCCTGTCCTGAGACCCAGCTCCTCCAAGGGGCAAATGTCAGATGCTCTACCCAGAAATGTGCCTGACTTCATTTTTTAAAAATCAGCTCTACTGAGTTTTAATTTACATGCAATAATAAGCACCCATTTTAAGCATATGATTTGATCAGTTTTGACATATGTAAATACCCTGTGTAGCCACCACTAAAATCAAAACATAGACATTTTCATCATGCCAAAAGATTTATCATGCCTGTTTGCACTCCTTCCCACCCAACTCCAAGCAACCACTGACCTGCTTCCTGTCAATAGAGATTCATTTAGTGTTTTCTGGAATCTCCTGTAATTGTAAGTATATAGCAGGTATGCTCTTGTGCCTAAGCTTGTATCTGGCTTTGGATGTGCAGAAAATCTGGCATCTTTTGGTCTAGTTCTCTTATTCTTAGACTGCAGGATGCAAACTAAGGCATTTGGAGGCAAAACCTCTGTACCATTCTGATTAAGGCAAGGATGCAGATCCACCCCCTTCCTCTTCATCAAAATCTACACAGGCCTCTGTACCTGGGGTTTCTTGATGTGATTGGACTTACTATCCTGACTGTTGAAGGCAGACTACATGGGGCCACTGTGGAAGAAAAATGACATCACACTCCCTAATCCTCCCGCTATGCCATGAGGGACTGGGTAGCATTATCCTTTGTGTTAAAGTGAGATACTGCTCATGGGACCATTAACTATCTGAGCTGTTGTCCTCAAACCCAGCAGGGAACAGGAACTGGACTCCAACCCCAAGAGCAGCAGCAGGACATGAACAGGGCTCTCAAGCCCTTTATCACTTAACTTTTCTGAGTCTCAGTTTTTTCATATCTATGTGTCCTATGACCAACCTGTTCTCATCCTTGGCTATTTTATTTCCCCTATTTTATTTTATTTTCATTACTTATTTTTTTCTTTTTGGTGGGGAGAGGGGCTCAGGGGATACGGTCTTGCTCTGTTGCCCAGGCTGGAGTACAGTGGCATGATCATAGCTCACTGTAGCTTCCTGGGCTCAAGCAATCCTCCTACCTTGGCCTCCCTAGTAGCTAGGACTATGGGCGTGCATCACCACACCTGGCTAATTTTAAAAAGTTTTTCGTAGAGAAAAGGTCTCGCTGTGTGTGTTGCACAGGCTAGTTTTGAACCTGTGGCCTCAAGTGATCATCCCACCTCAGCCTCCTAAAGTGCTGGGATTTACAGGCACTTTAGGAGGCTGAGGCAGTGCCACCACACCTGGCCATTTCCTCTATTTTATACAGATATGAAATAGGAAATGAAAATCTAAATGAAAAATAACTGGGAAAAAAGCAGTATATATAATGAGTATAGTGCAAATAAATGTATTGGCAGAATGTAATCTCATAGAGAAATTGAAATAAGGTTAGGGAAGTGAATGCAATTGTTGAATGTGGTGAATCAGATGCGATGCTGTATTTCTAGCCAGCACATCCTATTTCCTAGGAAAATGACACTCACCTTTGTTCCCCACTTTTTTTTGCCTTTAG
Seq C2 exon
TTGTGTTAGCAGTGCCTGGGCCTGGGCCTCAGAGGGAATGAAATCCACAGCGGACCTGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072:ENST00000317647:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF050557=DUF677=FE(38.4=100),PF0061118=FCH=FE(32.2=100)
A:
NA
C2:
PF050557=DUF677=PD(15.1=50.0),PF0061118=FCH=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development