HsaEX1025935 @ hg38
Exon Skipping
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:168787861-168828220:+
Coord C1 exon
chr2:168787861-168788048
Coord A exon
chr2:168802176-168802673
Coord C2 exon
chr2:168828158-168828220
Length
498 bp
Sequences
Splice sites
3' ss Seq
CAGTTGTTTGCTCTCTCTAGGAA
3' ss Score
8.82
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ATAAACTGAAGCACAAGAGGGTAAAAACTTTGTCCTTGGTCTTACAGCCAGAAAGTGGTGATGCAAAGAACTTAGTCCAAGCTTTGATCTGTTCTGCACTGCCTGCCAAAGCAGAACCTTGAGAAATACCCATGTTTGGGGGATGAGAAGAAGAAGATAAATCAGCAAAGAAAATAGTGATAAGAAAG
Seq A exon
GAATTAGCTAACCCTCAGAGAGGCAGTCTGTCTCCAAGTCCATGAGGTCCCCAAAGGTCAAAGCATCATACAATACAGAAAATAAAAAGCATGATTAATACTGCAGGCTGAGAGGATATGTGTTCCTGCACTGTCAGACCAAGCGCAAGAATTGTTGGAGACATGTTACAGCTTCTCTGCCTTCTCTCAATGTTACGCTGTTCAGGACTCAGGATCCTGCCCTCTGAGGGTTTACAGAAGTCATTCTCACTATCTCACACTGGCCGTCTTGACCCAGAGCAGTTCTTTACTTTCTCGGGACACAAACGGGATGAAAGTCCAGGGCTGGGACTTCCTCCTTGGAATGTTTGACAAGGACTGACGTACTCTAGGCCCTTTGAATCCCGGAAGTCCAGGACACACCCAACCTTGATTACAGTGTCCAGAATGCTGGAGCGTAGGTGAAAGGACAAAAGCCAGACACATTTCAACATGAGGGACCCACTGACAGATTGTCCG
Seq C2 exon
TTGTGTTAGCAGTGCCTGGGCCTGGGCCTCAGAGGGAATGAAATCCACAGCGGACCTGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072_MULTIEX2-4/8=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NA
A:
PF050557=DUF677=PU(5.5=44.4),PF0061118=FCH=PU(2.3=22.2)
C2:
PF050557=DUF677=PD(15.1=50.0),PF0061118=FCH=FE(24.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAGCACAAGAGGGTAAA
R:
GATGCAGGTCCGCTGTGG
Band lengths:
246-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains