HsaEX6016479 @ hg38
Exon Skipping
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:168787861-168802673:+
Coord C1 exon
chr2:168787861-168788048
Coord A exon
chr2:168801066-168801203
Coord C2 exon
chr2:168802176-168802673
Length
138 bp
Sequences
Splice sites
3' ss Seq
AAATTTCTTTTATTATACAGAGT
3' ss Score
5.3
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
ATAAACTGAAGCACAAGAGGGTAAAAACTTTGTCCTTGGTCTTACAGCCAGAAAGTGGTGATGCAAAGAACTTAGTCCAAGCTTTGATCTGTTCTGCACTGCCTGCCAAAGCAGAACCTTGAGAAATACCCATGTTTGGGGGATGAGAAGAAGAAGATAAATCAGCAAAGAAAATAGTGATAAGAAAG
Seq A exon
AGTTGCTTTGTCTAATTCTAGCCCTGTGGTAGCTACCCAAGATTGTTGTAACCTCCAGTGATCAAGTTCTTTGGATAAGCAAAGAGGGAGGGCATTAAGTGTGTGGAAAAGACCCCTCCTCTCCACTCTTGTTGCAAG
Seq C2 exon
GAATTAGCTAACCCTCAGAGAGGCAGTCTGTCTCCAAGTCCATGAGGTCCCCAAAGGTCAAAGCATCATACAATACAGAAAATAAAAAGCATGATTAATACTGCAGGCTGAGAGGATATGTGTTCCTGCACTGTCAGACCAAGCGCAAGAATTGTTGGAGACATGTTACAGCTTCTCTGCCTTCTCTCAATGTTACGCTGTTCAGGACTCAGGATCCTGCCCTCTGAGGGTTTACAGAAGTCATTCTCACTATCTCACACTGGCCGTCTTGACCCAGAGCAGTTCTTTACTTTCTCGGGACACAAACGGGATGAAAGTCCAGGGCTGGGACTTCCTCCTTGGAATGTTTGACAAGGACTGACGTACTCTAGGCCCTTTGAATCCCGGAAGTCCAGGACACACCCAACCTTGATTACAGTGTCCAGAATGCTGGAGCGTAGGTGAAAGGACAAAAGCCAGACACATTTCAACATGAGGGACCCACTGACAGATTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072_MULTIEX2-3/8=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF050557=DUF677=PU(5.5=44.4),PF0061118=FCH=PU(2.3=22.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTGTTCTGCACTGCCTG
R:
TTCTTGCGCTTGGTCTGACAG
Band lengths:
255-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains