HsaEX6016479 @ hg19
Exon Skipping
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169654665-169659183:+
Coord C1 exon
chr2:169654665-169654732
Coord A exon
chr2:169657576-169657717
Coord C2 exon
chr2:169658898-169659183
Length
142 bp
Sequences
Splice sites
3' ss Seq
AAATTTCTTTTATTATACAGAGT
3' ss Score
5.3
5' ss Seq
CAAGTTCTT
5' ss Score
-5.94
Exon sequences
Seq C1 exon
ATGCAGAACCCAGGGATATGGAGAGCCAATTGTATTTGTAAAACACTTAGAATGGTGCCTGACACGTG
Seq A exon
AGTTGCTTTGTCTAATTCTAGCCCTGTGGTAGCTACCCAAGATTGTTGTAACCTCCAGTGATCAAGTTCTTTGGATAAGCAAAGAGGGAGGGCATTAAGTGTGTGGAAAAGACCCCTCCTCTCCACTCTTGTTGCAAGGCAA
Seq C2 exon
GATCCTGCCCTCTGAGGGTTTACAGAAGTCATTCTCACTATCTCACACTGGCCGTCTTGACCCAGAGCAGTTCTTTACTTTCTCGGGACACAAACGGGATGAAAGTCCAGGGCTGGGACTTCCTCCTTGGAATGTTTGACAAGGACTGACGTACTCTAGGCCCTTTGAATCCCGGAAGTCCAGGACACACCCAACCTTGATTACAGTGTCCAGAATGCTGGAGCGTAGGTGAAAGGACAAAAGCCAGACACATTTCAACATGAGGGACCCACTGACAGATTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061118=FCH=PU(2.3=22.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAGGGATATGGAGAGCC
R:
GTTGGGTGTGTCCTGGACTTC
Band lengths:
257-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)