BtaINT0102832 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010362 | NOSTRIN
Description
nitric oxide synthase trafficking [Source:HGNC Symbol;Acc:HGNC:20203]
Coordinates
chr2:27335525-27341575:-
Coord C1 exon
chr2:27341450-27341575
Coord A exon
chr2:27335624-27341449
Coord C2 exon
chr2:27335525-27335623
Length
5826 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTCATTTTTTATCCTTTCAGAGC
3' ss Score
10.42
Exon sequences
Seq C1 exon
CTCCTCAATAAACTGAAAAAATCAACTGAGAAGTTATCAAAAGAAGATGAAAATTACTACCAAAAAAACGTGGCAAGCTGTTCTACCAGACTGAAATGGGAGAACACACTGGAAAATTGCTTCCAG
Seq A exon
GTAAGTTATGCATTTGTGGTTTTTTGTTTTTCTTTTTCCAAGGAGGCTTTGTATGGGAGAGAAATCACTGCTCCTAGGCACCCTTCAAGGGCTACAAGAAAAACATTTAACCTCTCGGTCTCCATCCATCTCATCCTCCTCTCTACCTCACAGCAGTGGGAGATAATTGTGGTTCTTACTGTATGGCTGCCAGGATGCAGTGTACATGTCCTGGTGTAGTCACAGCTAGCTGGCCTTCAAGGTGTGTTAGATGTAGCTGTCACTAACTACCCTTACCAGAGGCTCTTACTGGGTCTCTCCTTCCTTTTTCTTAGTGTCTTTTCCTCCTTTTAGGGTCTTCCTCCACCTTCTCTTCCCACCACACCCCACTTTCAGCAGTCCCTACTTTTACGTTGGAACATCATGGACATTATCTTCTTCACATATAAAGTCTTCCCGATGGTGACAAGATGTACATTTACTTATATTTCAAAAAACCTCCGTTCAGCTCAGCTTTAAAAATATTTAAGACCCTAGGTTTTTGGGTTTTTTTTAAGAACCCAAATCACATGGAGAATCTACTAGAAGCCAGAATCTCCATAAAGAAAAGAAAGGTTTCCTTTCATCTTTTTTGTTTCCTGGTTTGTTGCCACCACCATGCTGGAGAACACTGGAACTTTACTCCCTCTTCCTTTGAGTTCACACAGTTCCTCTTATCCCACATGAGTTCTATTAGGTTCTAAACTTCTCCTCTGGCTTTGAGCTATCCTCTGCCCCCTGAATGCCAAACCAAGCCCCACTAGACCCACTTGAGATGTTCCTGTTGAGTCATCCTTGCCTCACCTTAACCAATAAGGATTCCCTTCCTTACTATTTCCTTGGCTTGTACATACTGAGTCTATACCAACAGGTCATTGATTCACATATTACACTGTGTATTCTTATTCTCTGTTCTTTACAAATGACAGGAGTAACACGTGATATTCATGAAGGCATATAACGAAAGTTGGCTGAACTCAATTAAAAGAGAATTTATTAGAAGTGTGGGAGATAGAAATGGGTCCACCAGGGTTGTTCCATTTCGTTATTTTCCTCCATTCGCCAGCTGTTCTTCCTCTGTCCGGTCTGACTCTCCAGACTGGATTCACAGATTCTTTCAGAGGACATTCACTGAGCTGTGCTCAAGGCAGTTTACTAGATACTGTGAAAAATTTCAAGTGCAAATATTAAGAAATGAAACCAATTCCACAAATCATATGTCAAAATGAGTCATCACTTCATAATTATATGTTCAAGCCATACTTCCTACCTTCCAAGAAGAAACAATTCAGTTGGCAGAAATAACCTGTAATATATTTTGAAAAATAATAGCCACTCAAGGATCTCAGAGTGGTCCAGTGGTTAGGACTCTGTGTTCTCAATGATGTGGGCCTGGCTTCAGTCCCTGGTCAGGAACTAAAATCCTGCAAACTGTGCAAAATAAAATAATGTATGAGGCCAAAATAAAACAGTAATAGCCACTCTATCAAAAATGACTACAAATCAAATGCTTGATACTGGTAATATTTACTCGAGGAATTATTTTAGAAAACCATTTGCAATAAGTGCAAAGAATCTTAAAAATGTTCACATTCTCAACCAGTGTTCCTCATGTGAGCCATGGAACACAGAAAATAACGTGAGTGGCTGTTTTCTCAGTTCCCCAAGGATGATGGTAACTAATACCACTTTAGATGCAATGGAGAGATGGTAACTCAATGCAGACAACAGATGCCTTAGGACATTAGGGCTTAATTCTCTCTTAGAACCTTGGTTGAAGAACCTAATTTCCTTTCCAGAAATCCATCTTAAGGAAATAAATGAAAAACAAAACACATATTTCCGTTCGAACACATTAGAAATAAAAGGGAAGAAACAATGCAAGTGGCCAATGTTAAGAAGATGGCTAAATAAATCAATACATTCTATACAAGGGATTATTAATTAAAACAGTGTTTTGGAAACTCATAGCATTGGAAACTGCTTATGAACAATGTTAAGTGAAAAAACCGTATACCAATTTGAATAATTTCGTTGATAACTAGAAATATAAAATCACACATACATATATACCTCAACAGACCAAAATACATCAAAATGTTAACAGGGGTCCTCTCTGGGTGGAAGAATTAGAAATGGTTTTAAAATGTATTTTCTGATAGCCCTTTATGGCCCCAGAACAACGTCTAGCGTGCTTGTTAAAATTTAGGTTCCTGGACTTCTCTGGTAGTCCAGTGGTTAAGATTCCATATTTCCATTGCAGGTGGCCTTAGGTTCGATCCCTGGTGGGGAAACTAAGATTCTACATGCTGTGCAGGGCAGCCAAAATAAATAAATAAAATTGAGGATAAACTGACTCTTACGCCCTGAGTTGGGAATGAGAAGTTTTAGGCTAAAAAAAAAAACTTAAAATGCAGATTTCTGAGTTCCTGCCTACATGGGATGAATCACAACTTCTGAATGACTTTAGGAAGGGGTCTTGGTGATTGCTATGCATAGTAAAGTTTAAGAGTTTCTGCTCAAGAAAAAGCAAGATATTTCTTTGATCAGTTTCATGAAAACAATTTAGATGAAAATGAAGTCCCTCCAAGCTCCCTGGGTAGTTCTAACCGGAAGGCCAGAACAGCAGGAAATGAAAAGAATGAATGAAGAGTGTGAATTATGAAGCCTGGGCCCTGACAACCTCTCCATCTGCTCTTCCTTGATAACTCCTTGATCGCACTTTCCTTTCACGTGCTGTTATGAAAACACATGAGGCAAATTTGAGGTTCTCCAGAGTCTCTTGCTTCTCTGCACCCTATTTTATACAAAAAGAACAAAATAATAGAAAGCAATAATTCATTAAACAAGATATGGATTTCCCCTTTGCACAGTGGAATTTATCTCAGCCTCTTTTCATGAGCAAACATAGATCATCTTAACGATTTCCCTGAAATGTAATTAAAATCTGTTAAATATCACCATTGCCAGCAAGGGACAGGATTATTCTAGTCTCAGACTGATGCTAGTGGCTCAGCATTTGTCACAGTAAAGAAATAACCACCCACCAGGGATTCAATGTATTTCCCAAACCTGGCTTTTGTTTTCCATCCTGTCCTTTGTTTGTAGTGCTAAACTATAAGAGCTGATTTCCGGATCTTTTTCTATAATGTAAAGACTCTTTCTTTCTGAAGCCAGTCTCACTTGCCGTCCAAGACATTGAGCAGAGTTTATTTTACATATTTGTTAGAGGAGGCATATAGTTTGTACCCTGTGAAGAAGCATTTACATTTACTAGGCTACTCTTCAGAGAATGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATTGGGTCGCTGGGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTAGATGCTTTGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTCTGGGATCGCACAGAGTTGGACACGACTAAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAGGCTACTCTTCTGGGTCTTTAATCCTGTATCTGGGAGACAGAGGGCACATTCAAATGGCTGGTACTTGAGATTTTGGAGAAAGACTCAGGAGACCAACAGCAGAAACAAAAGGTATTTCATTCCCATTGACTTACAAAAATTGTGCGGATTCTGACTAGACAAGGAAGATGGCCTTGGGGAGCAGCGCTCCAGGCTTCCCAATTCAAAAGTCAAGACACTTGGCACAGGATCAAAGTTTGCATGTGGTTGACATAGCTGTTCACAGTTACTGCAGCCTTTTACCACTTGCATTTAATAGTAGCATTAAAATGACTGTATACTAGTAAAGTGTGGTGTGTCCAGACAGCAGAACATTATTCATCCTTAAAAGGAAGGAAATTCTGACCCAGGCTACAACAAGGATGAAAATCTTGAAGATTTTATGCTAAGTGAAATAAGCCAGACACAAAAGGACAAATATTGTATGATTCCTCTTGGATGAGACACTTAGGATAGTTTCAGATTCACAGAAGACCGCAAGTGGAATTGTGGCTGCTGGGATGATGAGGGGAAGGAGAATGGGGAGTTATTGTTTAATGGGCACAGAGTTGCAGTTTTGCAAGATGAAAAAAATTCTGGATATGGATAGTGGTAGTGGTTGCACAATGATTTGAATGGACTTAATGACACTGAACTGAACACTTGAAAGTGTTGAAAATGGTAAGCTTTATGCAACAATTACACAAATTTTTTTTAAATTTAATGACTATATATCATAGGTGAAATAACAACAGGATATGAATGCAGCCTACATACAGGGATATAAAGGAACACTGTATTGGACAGGCCAGTGGCTCCTGCAGGTGTGCTGAGAAGCAGGATGAGAGAAGCCAGTGGCTGCTGTGATGTCCCTGCACCCCCACTCCACCTAAGGCCTTGAATACAGCCCGCCCCTCTTACTTCTTTGGTAATGTTAGCCACTGATTTGCCCAGGACAGCGTTCTTCCTCATGAAGGACTCTTGCTGAGTGCTCTTTACTATGGGAAGGGGTGAGGTAGAATGGCAGGTATGAGATGAACCGGCCTAGCCTCTGGATAACAAGGAAAAGCCCAGGCCCTGTCCTTACAGAAACAGAATGAGATGTTATGTCTCGGACACCTGCCACCTCTGTCAAACCCACAGTTTCTGGGCACATACCCAGCAGCCTCCTGCAGTCCCCAACATAGCCTAGGAATCCCCAGGGTATATTCCACTTGACCCAGCCTTCTCTGAACTTCTCTGTTTCCTCAAAATAAGCAATCTGCAGCTTGGCTCCCAGTGAGTGACAAGAGCCTGATAAATAATTTTTTCTAAAATGTTAATGGCTGACAAGCCAAATGTGACCTCCCTAATTTCATTTATTCTTCCTAGTTAAAAAAAACAGACCAACTAAAACTCCAAGAGTGGAATTTTTTCATCCCCCACAAAATGAGAAGGCTGTATCCCTACCTTCAAAGAGTAGTCTCTGAACCCCCAGGCCAGGAAAATGACTTGGTCAGACTTTAAGGTTCTGCTCTCATCACATAAGCTTCCTTAAGAAGAGAATTTGCATCTCATCATCATTGTCCCTGCAAAGACTAACAGAATGCCTTGTATGCGCTGCAAACAACTCTAGAAATATTTAGTGTCTGACTGCATTTCCTAAATACAGAAGGGCTTTTACTGGGCTTCATTCTTTTTCTGGAACGCACAAATGATTTCAAATGATTCCTTTCTCCCCCTTCTTTGTGAACATCAGGTAACCTATGGCATCCACCTGTGTGCCTTTTGGCCTAGAAAAGACGGTGAAAGTATGAGAGTGAAATCAACCCTGCATGCGTGCGTGCACACTCATGTCCAACTCTTTGCAACCCTGTGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGAGTTGCCATGCCCTCCTCCAGGGGATCTTCCCGGCCCAGGAATCAAACCCACATCTCCTGCATCTCTTGCATTGCCGTGGATTCTTTACCCCTGAGCCACCAGGGAAGCTGAAATTAATCCTAGTGGAGGATAGACAGACACCAAATCCATTCCCATCCTGGGAACCTACCCCCTCTGCAGTTTGGATCAAGAGGCACAAACAGGATGGCTCATTCAGACTTTCTTCAGTGTGTTAGTGCTTGGTGGGCGCCTTTAGTTTTGTAAAAATAACAGTGGGCTGATGTAATTTCATTTTTTATCCTTTCAG
Seq C2 exon
AGCATCCTGGAGCTGGAGAAGGAAAGAATTCAACTCTTATGTAATAACTTAAACCAGTACTCCCAACATATTTCTGTTTTTGGCCAAACCTTGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010362:ENSBTAT00000013682:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(38.2=61.9)
A:
NA
C2:
PF087426=C8=FE(47.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]