HsaINT0114785 @ hg19
Intron Retention
Gene
ENSG00000163072 | NOSTRIN
Description
nitric oxide synthase trafficker [Source:HGNC Symbol;Acc:20203]
Coordinates
chr2:169699502-169707692:+
Coord C1 exon
chr2:169699502-169699627
Coord A exon
chr2:169699628-169707593
Coord C2 exon
chr2:169707594-169707692
Length
7966 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCAATTTTCATTCTTTTCAGAGC
3' ss Score
9.45
Exon sequences
Seq C1 exon
CTCCTCAATAAACTGACAAAATCAACTGAAAAGTTGGAAAAGGAAGATGAAAATTACTACCAAAAAAACATGGCGGGTTATTCTACCAGACTGAAATGGGAAAACACACTAGAGAACTGCTACCAG
Seq A exon
GTAAGTTATATATTCACATTTTTTTCTTCTTCTGTGGAGCTTTGTGTGACCTTGAAGATGGAGGTCAGATTACAGTGACAAGACCTGCCCTCTGTCTTAGCTATGAGCATCACACATATTGTGACTTCAGACAAACCACATTTCCTCTCATTGTTTCAGTTTCTCCATGGATACAATTACCAGTGACAATTTATTGAATTTCACTGGCCAGAGTTTCTGCTCCTAATTCTTAGTGGACAGGATAGCACCCAGCTAACTTCAAAAAGTGCTGTCAAAGTGAAGCGTAAATTAAGGCTTAAGTGTTAGGTGCTTCAAAATTAGTTTTAGGCATGAGTGATGACTCATACAGTGATCGCTTATGGAGGTCAGGCATCGTGTTAGGCACTGGAGATACAGAGCATTGAATAAAGTAACATCTCAATGCTTGAGATGTGTACATCTCAGTGGCAAAAGTAGACACATAAAGAAGGAATTGTGGCAAATTATCTGATAATAATGGGCAAAATATGTCAGCAAGCACATCACAAAAGGAGAAATCAAAATCATCGATAAGCCTATGAAACAATGCTAGATTATTTGGCAAAAATTAGAACTTGACAATATCAAGTGTTGGTAAGGATGTTAGGAAACAAGAATTATTGTACCCCTGTAGGGGGAATAATTTAATGATATTTAGTGAAACTAAAATAAGCATGTACTTACTGCAGCAGTTCCCTTTTTAGGCATATATCCTACAGAAAAATGTACATTTGTACTCCAAGAGTGATGCACAAGAATGTTTATGGGAGAATTGTTTATAATTGCATGTGAGAAAAAACTGTACGCAATCTTCATATCCATCAAGAGAAGAATTACTCTTCAAATATGCTCGCATTTGGAAAGTGAACTAATATCCATCAATGAAAAGTTAATTAAAACTATATTTAAACATGAATTAACCTCGAAAAACATGATGTTGAGGAAAAGAAATATACCACTTACACAATCTGTGTAAATCAACATTCTTTTAAACTCATGCGCAAACTATACTGAGTTTATATGTGTGTGTTTGTAAACTTATACATGGGGACTGTCCCTGTGTTCAGTGACAGAAATGGAGCCCATGGTGGGAATACAACAGAACTGCCAGAAACAGCCACGCAGCTTATGCACGGCCCCTGGTGAAGCAGTACAACCCCAGGCTCTACATAAATATGACCAAATTAAATAACTATCAATTCTGGAGAGTAAGAACATGAATATTTTGGTTTTATTTTTCCCCACCTGTTTTAAGTTTAAAAAAAAAATGTTTAAAGCAGATACAATTGGAGAAAGCCATGATCTGATGGCCAGCCTGGAACAAGTACTTGGTGCTCAGTGCTCCTCTTTTAGGCTGTGCTAAGCACATTCATGTGTTTCTGTTTTGTATTAATCATGACATTATGAGAACATTGAGGCTGGAAAGATGAAGCAATGAGCCTGAGATGGTTTAAGATTCAGCCTGGGCGGCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCAAGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGCGAAACCCCGTCTCTACTAAAAATAGAAAAAATTAGCCGCGCGTGGTGGCGGGCGCCTGTTGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCATGCCACTGCACACTAGCCTAGGCGACAGAGCAAGACTCCGTCTCAAAAAGAAAAAAAAAAAAAGATTCAGCCTGGACCTCTGCATTATGCTCCTGCCCCATTGAAAACTGGGAGAGCAAAGGCTATATGGCAGGCGGAAACCCAACGGCTGCATTTACATCTCTTGCAATTCAACCACTCAGAGCAGGATAGATGCAGAATTAGAGAAGAAAGGGGAAATTAAAGGAGAGATGAAAACTTGGGTCAAAGAGGGGAACAAATGAGAAAAAATTCCTTAATTTACACCTTTGAACATAAGCTCCGGGTACTCTCTTGGTTTATGCTAGATAGATTTTAGATGAAGGTGATGAGAAAAGGTCAGGGATTTAAATTCTAACTTGATTCATTTGAAATCTGGCTCTGCAACCTGGGCTCTGATCTTGCCTCACCTCACCTCATCACTTCCTGATGAAGCCGTGGTCTTTCCACTGAGGTCAGCTTCCTTGGATGGCCCTGTTAGGAGATGGGAGAGACATTTCTGCTCCCACTCCATCTTCCAGGCACCCACCCTTCAAGGGCTATGAGAAAAATATTTCACCTCAGTGTCTCTATCCTCATCACCCTTCTACCTACATCGCAGCAATGGGAGATAAATGGGTCCTACCTGGTGTAGCTGATAACTAGCTTGCCTTCTTCAATATATGTTAGGGAAGGCTATGATTATCTTCATTATCAGAAGCTCTTGCTACGCCTCTCCTTCATCTCAGTTTCCTTTCCTCCTGTTAAGATCCTCTACATGTTTCCCCTACAACCACCACTCCCCCTTCTCAGCATTCCCAGTGTTTATGTTGAAGCATCATGGAAATTATCTCTTTTCTTACAGTCTTCCTGATGGTAACAAGGTATACATTCATTTACATTTCAAAAGGCATCTTTCAACTTCAGCTCTAAAAATATTTAAGACCTAGTTTTAGTTTTTTTCTTCCTTTTTTTTTTTTTTTTTGTTAGAATCCAAGTCACATGGAATATCTACTCATCATAATGTCCTTGAGGAAGAGCATTTTCTTTCTCCCCTCTTGTATCCTGGATTTTTGCTACCTCTATGCTGGAGGCCACCAGTGTTTCAGTCCGTGTCCTTTTTAGTTCATACAGCTTCTCCTACCCCACCTTCCTCTGAGTTCTCTCCTGCCTCCTGAGAGCCATCTCAAGCCCATTAGCCACAACGTGAGACGACTTCTGTCCAGTCACTCTTGCTTCACTTGAACCCTCAATAATGATGCCCTTAGTTGGTATTTCCTGGGCTTGTGTATACTCAGTCTATACCAGAAGGTCATTGACTCACATATTACTCTATGTATGCCATATTTTGTGTATGTTTATGGCACTCAAGTGTCAAATGTTAGATTCATGAAGACATATAACAAAAACAGCCTGAATTGACTCAAAGAGGAATTTTATTATAAGTGTGAGAGATGGAAATGGGACAGTTAGGGTCTCTCAGTTTCATTTTTTCTCCATTCTTTCACCATTCTTCTGTACAAATTGAATATAAAAATTCATTTTAGGGTCCTACGAAGTGTTCTCTTATTCCTTTTTACTCTACAGGTTGGATGTACAAATTCCTTCAGAGAACATGCATTGAACTACATTCAAGGCAGTGTAGTAGATACTGTGAGAAATATTGTAAAGCCTCAAATGTGACTATAAGTAATGAAACCAATTCCACAAACCACATGTCAAAATTAGTCTTATTACTTCACAATCATACTGTATTCTAGCCACATCCCACCCTCCAAGAAGAAACACTTCAGATGATAGAAATAACCTATATTTTTCACAATAATAACCATACTACCAAGAATTACAAAGAATCAAATGCTTGGTACTGAAGTACTTACTCAAGGAATTATTTTTAAAAGCCATCTGCAATATGTGTCAAGAGCCTTAAAAATATTCCCTTTCTCAACCAGTGTTCCTCCTCTAAATCCCAGAACACAGAAAATGATTCGAGTGGCTGCTTTCTCAGTTCTCCCAAGGATGGCACTTGAGTAGTCCCACTCTAGATGAGACGAATGACAACTCATTACATAAAATGGACGCCTCAGGACAGTAGGGCTTCATTCTTTCCTAGGACTCTGTTGAAAAAGGTAATTTCCTTTCTATAAAAGTGTCTTGAGGAAGTAGCTGACAAACCAGACACAGATTTCTATTTGAAACATGTTAAAGGCAGCAAACATCCCAAATGTCCAACATTAAAGGGATGACTAAGTGAATAAACACGCCTGCACCATGGATGCTTATGAAATAATTAAAGTGGTATTTTCAGAGACTAATGGCACGGGAAACTGTTCACATGTACGGTTAAGTGGAAAAAACAGAATTTCAAATTTGAATAATTTGATAGATAACTAGAAGATAAAATCATACATATACACATACCTAGACTGAAATATATCAATATGTTAATAGCAGTCACTTCTGGGTGGAAGAATTATGATTTTAAAATGTATTTTTTGTGGGCCTCTGTGGCCCTAGGACAATGTCTCAAAGCGCCTGGGGTGCTTAAAAGTCAGATTCCTGATCACCTCCCTAGACCTGGGAGCCTCTGAATCAATCAGAGCCTCTGAATGATTATAAAGAGGGGTCTAGATATTCTAAAGTTTGAGAGTCCCTGCTCTAGAAAGAGCATATTTCTTTTATCAGTTCTATGAGAGTCATTTAAATGAAAACAAAATCCCTTTGACTTCTTCCTGTAGTACCAGCCCAAAGGCTAGGACAGCAAGAACTGGAAGGAACGAATGAAGAACAAATTGTCATGATGCTTGGGCCCCAGACAGGCTCTAAATCTGCTGAAATCTGAATCTTTCTGGATAACTCCTTGACCACACTTTGTTCATATATACTATTGTGGAACCTCAAGAGGACAGTTTGAGGTCCTCCAGAGTATCTTGCTTCTCTACCACCTATTTTATATAAAAAGAACAAGATAATAAAAAGCAAAAAATCATTAGATATGGATCTCTCCTTTGCACAGTGGAATTTATTTCCTCCTCTTCTTATGAGCAAACATAGATCATTTTAATGATTTCCCTGAAATGTAATTAAAATCTGTTAAGCATTACCATGTCACTAAGGAACACTGGTTATTCTAGTCTCAGATTGATGCTAGTGGTTCAGCACTTGTCAAAGTAAAGAAACACCTGCCCACTAGGGATGCAATATGTTCTAAAACCTGGCTTTTATTTTCTCTTCTCTCTTGCTCATAGGCTAAAACAGAAGAGCTGATTTCTAGATCTTTTTCTATAGGGTAAGGACTTCTTCTTTTTGAAGATTGTCACATAGGAGATCCAAACAACTGAGCAGAATTTGTTTTACGTATTTGTTATGAGGCATATCGATTCTGCCTTTTAAGAAGCAAAACATTTGATAGGCTATTCTGTGTCTTTAATCCTTTATCTGGGAGACAGAAGGGCAGACGGCCACATTCAAATGACTGGTGCCTGCAATTTTGTGAAAGCCTCAGGGGACTGCCAGCGTAAACCAATCCATTTGACTCCCATTGACATATGAAAATTGGGCAGCTTCAGAGGCAACTAAGAAGATTGCCATGGGGGCGTGGCTCCAGGCTTCCAATCCAAATGTCAGGACACTTGATACAAAAGCTAAAGTTGCATGTGATTGGCACAGATGTTCATAGTTACTGCCTGAGCCTTTTACTACTTTCATTTGCAAGCAGTGTTCAAATGACTATATACCAAAAAACAAAATGTGGTATATGCATACCATGGAATATTATTCAGCCAAAAAGGAAGGGAATTCTGGCACATGCTACAACATGGATGAACCTTGCAGACATTATGCTAAGTGAAATAGCCAGATGCAAAAGAACAAGTAGTGTATGATTCCTCTTGTAAGAGGTATCAAGAGTAGTTAAATTTGTAGAGACAGAAAGTAGAATGGTGGTTGCCAGGGGATGCAGAGCGTAGGAAATGAGAAGTCGTTGTTTCATGGGTACGGTTTACTTTTGCAAGATGAAAAAAGTTTTAGAGATGAATTATGGTGGTGTTTGCATAATAATGTGAATGCACTTAATGACACTGAAATGGATGCCTAAGGTGGATAAAATGGCATGTCATATTATGTAAATTTTACCATAATTAAAAGTATAAAGAAATTTAAAATAATTTTAATCACCATATACCATAGATGAATTAACAACACAGGGATATAGAGGAATACCATACTGAATCAGGCCAATGGGCTCCTGTAGGAATTTCAAGAGGTGAGCAAGGAGAACCCAGTGATCTTTGTGACTCTCCATTCTCACCTCTCTTGCACTGCCAAGGGCCTTGAGACATACCCATCTTTCTTCTTCCCTATGGTCGTGTTACCCACCAACTTCTCCAAAGCCTTGTTCATGAAAGATGATTGCTGGTGCTCTTTGTGGGATGCAGGAGTTGGGATGGTGGGTATGAGAGCAACTGAGCTGGACTTCCCTGGATAAAAGGATGAATGCCCAGGCCTTGTATTTTTTCTTTCTTTCTTTCTCTTTCTTCTTTTCTTTTTTTTGAGATGGAATCTCACTCTTTTGCACAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCACCACCTCCCAGGTCCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGGCGCCCGCCACCAGGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCACGTTGGGCAGGCTGGCCTTGAACTCCTGACCTCAGGTAGTTCACCCGTCTCGGCCTCCCAAAATGCTGGGATTATAGGCATGAGCCACCGCACCTAGCCAGGCCTTGTTTTTACAAAAAAAAAAAAAAAAAAAGATGGGAAGAATTTTGTCTTGGACACCTGCCATCTCCATCAAAGCCCAAAGTCCCCTGGGCACATACCCAGCAGCCTTACACTGCCCCCACATGGCCTTGGAGTCTCCCTGAATACTCTGCCTGAGCCAGCCTTCTCTAAGAATGCTTAGTTGCTAAAGCTTTCTGCCCCCTGTAAAACCACCAGTCAGCAACTCAGTTGGCATGGGTCCAATAAGTAACATTTTCTCATTTTTTTTTTTTTTTTGAGACAGTTTCACTTTTGTCACCCAGGCTGGAGTGCAGTAGCATGATCTCGGCTCACTGCAAACTTCACCTCCTGGGTTCAGGCAATTCTGCCTCAACCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATAAGGTTTCACCATGTTGGCTGGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCTCCCACCCTGGCCTCCCAACGTGCTGGGATTATAGGCATGAGCCACTGTGCCCGGCCTCTAAAATGTTAATAGCTAACAAAGCAAATGTGATTCCCCTCACTTTCTTATTTACCCTTCCTACCTAAAAGTCATAAGTCTAATAATGAAACTTCTGTCATCTCACACAAAATAAAGAGGCTATGTGTCTACCTGCAAACAGCGGACTCTGACTCCCAGGCCTAATTTTAGGCAGAATTATAAATTGGTCAGACTTTGGGATTCTTCTCTTGTCAAATAACCTCCTTAAACAGAGAATTTGTGGCCTGTCATTCTCTTCCCTGCAGACTAGCAGAACGCCTTGAATGTACTATAAACAATTCTAAAACTATTGGGTGTCTCAATGCATTTCCAAGACATGGATATGGGCTTTCCTGGGCTTCACCCTCTGGAATTCTTCCCAATTTTTTTTTTTTTTTTTTTGTAAAAACAAGGCCTGGCTAGGCGCGGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCCAAGACAGGTGGACCATCTGAGGTCAGGAGTTCAAGGCCAGCCTGCCCAACATGGTGAAACCCCATCTCTACTGAAATTCTCTGGAATTCTCTGGAATCCATGATTGTGTCTCAAATGCTTCCTTTTCTTCTTTTCTCCCCCTTCCTCATAAACTTAGGTAACCCACAGCATCTGCCTATATGCCTTTTGGGTCAAAAGAGCCTGGGGAAAGTGTGTGAGTGATTTAAGATACCAAGACACATTCCTTCCTGGAAATCTCCCTCCACTATGGTTTGGATATGACATAGTCAAGAGGCTAATCATGAGACTTTGTTCAGTCTGTCTTCAGGTGTGTCAGTGTTTGATGAGTGACTTCCATTTTGCATAACAACTGGCTGATCTTACCCCAATTTTCATTCTTTTCAG
Seq C2 exon
AGCATTCTGGAGCTGGAGAAGGAAAGAATTCAACTTTTATGCAATAACTTAAACCAGTACAGCCAACATATTTCTCTTTTTGGCCAAACCCTGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163072-NOSTRIN:NM_001039724:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(41.1=54.8)
A:
NA
C2:
PF087426=C8=PD(55.4=93.9)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)