BtaINT0102844 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:103997313-103998550:-
Coord C1 exon
chr11:103998349-103998550
Coord A exon
chr11:103997467-103998348
Coord C2 exon
chr11:103997313-103997466
Length
882 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGCTGCCCCCTCGTCCCCAGACC
3' ss Score
8.89
Exon sequences
Seq C1 exon
CTCCTGCTTCAACGGCGGTACCTGCGTGGATGGCATCAACTCCTTCACCTGCCTGTGTCCACCTGGCTTCACGGGCAGCTACTGCCAACATGACGTCAACGAGTGTGACTCTCGGCCCTGCCTGCACGGCGGCACCTGCCACGACAGCTACGGCACCTACACGTGCACCTGCCCGCAGGGCTACACAGGCCTCAACTGCCAG
Seq A exon
GTGAGGGGCCCGGGCACACTGAGCACCCCAGCCGGGTGAGGGGGGGCCCGGGCACACGCCGAGCGCCCCGGCTGGGTGAGGGGGCGCCCCGGCACACGCCGAGCGCCCCGGCTGGGTGAGGGGGCGCCCCGGCACACGCCGAGTGCCCCGGCCGGGTGAGGGGGCCTGGGCACACGCCGAGCGCCCGGGCCGGGTGAGGGGGCGCCCCGGCACACGCCGAGCGCCCTGGCCGGGTGAGGCAGCGCCCCGGCACACGCCGAGCGCCCTGGCCGGGTGAGGGGGCCCGGGCACATGCCCAGTGCCTTGGCCGGGTGAGGGGGCCCGGGCACACGCCGAGCACCTCGGCCGCATGCCTGGGCCCCTCGCCTGGATTCCAGCTGGCTCTCCCACCCCTGGGAGCCAAGGAGGGGCCAGATAAGGAGGCAGAGGTGGTGAGCAGGGCGGTTTCCAGCTCAGGCAGCAGAGGCCACAGAGCAAGAACAAGGACCAGCTGTTGGGGGGGAAGGCGGCTGAACGCCAGTGTTTGCATGAAGACTGTGTAAAAGTATCAGAGGTTTATCTTCTTTAAAGATGTTCACACACAAAACACCAATTAGAAGAGAGCTGTTTCCTTCTTAAGAAAAATCTTCCTCCAAGGAAAGGCAGCCTGTTGTCTGGATTCACCACCAAGGGCCCAGAGCAAGAGAGGGGCCCCCGTAGCCCCAGTTGCTCCCGACCAGGGGGGCCCCGTGGGCCTCGGTGTCCATTTCTGTGGACTGGGGGGAGGTCACGGGCCACCTTGGGCGCGAGGGTTTCTGGCGCCCATGTGTGTCCCCCGCCGGGTGGGCTGGGCCCGTGGGGGCGGCGGGTGGGGTGTGAGCAAGGCTGCCCCCTCGTCCCCAG
Seq C2 exon
ACCCTCGTGCGCTGGTGCGACTCGTCCCCCTGCAAGAATGACGGCCGGTGCTGGCAGACCAACGCGCTCTACCGCTGTGAGTGCCACAGCGGCTGGACCGGCCTCTACTGTGACGTGCCCAGCGTCTCCTGCGAGGTGGCCGCGCGGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799:ENSBTAT00000017746:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
A:
NA
C2:
PF0000822=EGF=WD(100=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCTTCAACGGCGGTA
R:
GGCCACCTCGCAGGAGAC
Band lengths:
343-1225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development