BtaINT0102854 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:103992057-103992542:-
Coord C1 exon
chr11:103992326-103992542
Coord A exon
chr11:103992145-103992325
Coord C2 exon
chr11:103992057-103992144
Length
181 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
3' ss Seq
CTCGGCCCCGTCACCCCCAGGCC
3' ss Score
8.63
Exon sequences
Seq C1 exon
GTGAGACGGTGGAGCCGCCCCCGCCGCCGCCGCTGCACTTCATGTATGTGGCTGTGGTGGCCTTCGTGTTGCTGTTCTTCGTGGGCTGCGGGGTGCTGCTGTCGCGGAAGCGCCGGCGGCAGCATGGCCAGCTCTGGTTCCCTGAGGGCTTCAAGGTGTCGGAGGCCAGCAAGAAGAAGCGGCGCGAGCCCCTCGGCGAGGACTCCGTGGGCCTCAA
Seq A exon
GTCAGTGGGCGCGGCGGGGCGTCTGGGTGGGGCCGGGCTTGCGGGAGGCGGGGCTGCCCCTCCCCTCCTCCGCGGCGCCGGCCTCGGGCCCGGGCATGGGCGGGGCCTGGAAGGGGAGGGAATCTCCCTGGACCCCCGCTCCCCGCTTAGTCGCACCTCCCCTCGGCCCCGTCACCCCCAG
Seq C2 exon
GCCCCTGAAGAACTCCTCGGACGGCGCCCTCATGGACGACAACCAGAACGAGTGGGGCGACGAGGGCCTGGAGGCCAAGAAGTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799:ENSBTAT00000017746:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.767
Domain overlap (PFAM):
C1:
PF076847=NODP=PD(15.0=12.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTGCACTTCATGTATGT
R:
CACTCGTTCTGGTTGTCGTCC
Band lengths:
243-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development