BtaINT0102859 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:103989563-103989929:-
Coord C1 exon
chr11:103989782-103989929
Coord A exon
chr11:103989661-103989781
Coord C2 exon
chr11:103989563-103989660
Length
121 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GCCCTCTGCTCCCCTCGCAGGCA
3' ss Score
10.89
Exon sequences
Seq C1 exon
ATCCTGATCCGGAACCGAGCCACCGACCTGGATGCCCGCATGCACGACGGCACGACCCCGCTGATCCTCGCTGCCCGCCTGGCCGTGGAGGGCATGCTGGAGGACCTCATCAACTCTCACGCCGACGTCAACGCTGTGGATGACCTGG
Seq A exon
GTGAGTCCGGCTGGGCCAGCCCGAGGGACGGGGCACGCCACGGCCACCTGCCCACCCCTACCCGCCTGCCGACCTCAGACCTGCTTGCCGACTCCTGACCCGCCCTCTGCTCCCCTCGCAG
Seq C2 exon
GCAAGTCCGCCCTGCACTGGGCAGCCGCGGTGAACAACGTGGAGGCTGCTGTCGTGCTGCTGAAGAACGGGGCCAACAAGGACATGCAGAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799:ENSBTAT00000017746:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(13.3=26.0),PF127962=Ank_2=PU(30.4=56.0)
A:
NA
C2:
PF127962=Ank_2=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGATCCGGAACCGAGC
R:
GTTGTTCTGCATGTCCTTGTTGG
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development