BtaINT0102866 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:104005919-104006831:-
Coord C1 exon
chr11:104006718-104006831
Coord A exon
chr11:104006033-104006717
Coord C2 exon
chr11:104005919-104006032
Length
685 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CGTCCCCTCCCCGGCCACAGGCT
3' ss Score
8.36
Exon sequences
Seq C1 exon
GCTACGAGGGCTTGCACTGCGAGGTGAACACGGACGAGTGTGCCAGCAGCCCCTGCCTGCAGAACGGCCGCTGCCTGGACAAGATCAACGAGTTCGTGTGCGAGTGCCCCACTG
Seq A exon
GTGAGACTGGGCCCCGCTGCCCGCCCTGCCCCTGCGTCAAGGCCGGGTCAGGTCCCCGTGGCGGGAAGGGGGCGTGAGAGCCTCACCTCCGGAGTGTGGGCAGGGGGGTGGGTTGGTTTTCAGCCCCCAGCAGACAAAGCTGGGCCGGGCAGCGTTCCTGGCCCCCACCTCGCTGAGAAGCCCGGGGCCCAGAGACCGTCCTTCCTGCTGTCGTGCCCTGGTGGGAGGAGGGCCGGCCAGCCACGCCCACCTGCGTCTGCCGGCAGCAGTGGATGTGATGGCCAGGAGGGCCTATAGAGCCTGTGGGGGCCCTGAGCCTGTCGCAGGGAACGGCTGGGGGACGCCAGGCCCGGGGAGGTGTTGGGGGTCAGAGCCCTGGACCTCCTGCGATGCAAATCAACTGTCCCAGACACCGAGCTGGGAACCGAATTCTCAGCCCAGCCCGGCTGTAGCCATGGCAACCGTCTTGGGCTGAGCCTCCTCTGAGGGGGCAGGGCGGGAGGGCTAGGACCCCAGGGGTGGGCTCTGAAAGAGGGCGAGGCAAGGATACGGGCGTTTGCCGTTTGCCCAGCCCTGGCCAAAGCACTCCCGGGCGCCCCCTGCCCCCCGACCTTGGCCAGCCAGGGCTTGGCTGTGGTGCCGTTGTGCCCCTGGCGTCTGATTGCCGTCCCCTCCCCGGCCACAG
Seq C2 exon
GCTTCACCGGGCACTTGTGCCAGTATGACGTGGACGAGTGTGCAAGCACACCCTGCAAGAACGGCGCTAAGTGCCTGGACGGGCCCAACACCTACACCTGCGTGTGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799:ENSBTAT00000017746:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
A:
NA
C2:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGGGCTTGCACTGC
R:
CACGCAGGTGTAGGTGTTGG
Band lengths:
217-902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development